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Cluster: HRGMv2_1044_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1044_9 HRGMv2_1044_9_10 12556 13497 - GT2
pfam HRGMv2_1044_9 HRGMv2_1044_9_11 13494 14735 - Wzy_C
pfam HRGMv2_1044_9 HRGMv2_1044_9_12 14728 15822 - PS_pyruv_trans
CAZyme HRGMv2_1044_9 HRGMv2_1044_9_13 15825 16832 - GT2
CAZyme HRGMv2_1044_9 HRGMv2_1044_9_14 16851 17864 - GT32
CAZyme HRGMv2_1044_9 HRGMv2_1044_9_15 17857 19140 - GT4
CAZyme HRGMv2_1044_9 HRGMv2_1044_9_16 19137 20261 - GT4
TC HRGMv2_1044_9 HRGMv2_1044_9_17 20262 21023 - 9.B.18.1.2
Gene ID: HRGMv2_1044_9_10
Type: CAZyme
Location: 12556 - 13497 (-)
Gene ID: HRGMv2_1044_9_11
Type: pfam
Location: 13494 - 14735 (-)
Gene ID: HRGMv2_1044_9_12
Type: pfam
Location: 14728 - 15822 (-)
Gene ID: HRGMv2_1044_9_13
Type: CAZyme
Location: 15825 - 16832 (-)
Gene ID: HRGMv2_1044_9_14
Type: CAZyme
Location: 16851 - 17864 (-)
Gene ID: HRGMv2_1044_9_15
Type: CAZyme
Location: 17857 - 19140 (-)
Gene ID: HRGMv2_1044_9_16
Type: CAZyme
Location: 19137 - 20261 (-)
Gene ID: HRGMv2_1044_9_17
Type: TC
Location: 20262 - 21023 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1044_9_15 vegetarian > vegan 2.46050 0.01882
HRGMv2_1044_9_16 vegetarian > vegan 2.55184 0.04336

🧭 Explore Read Mapping of CGC

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