Cluster: HRGMv2_1042_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1042
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1042_4 | HRGMv2_1042_4_65 | 66010 | 67500 | + | 4.A.1.1.7 |
| TF | HRGMv2_1042_4 | HRGMv2_1042_4_66 | 67733 | 68464 | + | GntR |
| CAZyme | HRGMv2_1042_4 | HRGMv2_1042_4_67 | 68608 | 69777 | + | CE9 |
| pfam | HRGMv2_1042_4 | HRGMv2_1042_4_68 | 69852 | 70283 | + | DUF386 |
| CAZyme | HRGMv2_1042_4 | HRGMv2_1042_4_69 | 70769 | 72565 | + | GH35 |
| TC | HRGMv2_1042_4 | HRGMv2_1042_4_70 | 72568 | 73032 | + | 4.A.6.1.18 |
| TC | HRGMv2_1042_4 | HRGMv2_1042_4_71 | 73126 | 74013 | + | 4.A.6.1.18 |
| TC | HRGMv2_1042_4 | HRGMv2_1042_4_72 | 74003 | 74842 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | HRGMv2_1042_4 | HRGMv2_1042_4_73 | 75031 | 75654 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1042_4 | HRGMv2_1042_4_74 | 75736 | 76164 | + | 4.A.6.1.8 |
| TF | HRGMv2_1042_4 | HRGMv2_1042_4_75 | 76252 | 76986 | + | GntR |
| STP | HRGMv2_1042_4 | HRGMv2_1042_4_76 | 77098 | 78264 | + | SIS | SIS |
| CAZyme | HRGMv2_1042_4 | HRGMv2_1042_4_77 | 78381 | 79550 | + | CE9 |
Gene ID: HRGMv2_1042_4_65
Type: TC
Location: 66010 - 67500 (+)
Type: TC
Location: 66010 - 67500 (+)
Gene ID: HRGMv2_1042_4_66
Type: TF
Location: 67733 - 68464 (+)
Type: TF
Location: 67733 - 68464 (+)
Gene ID: HRGMv2_1042_4_67
Type: CAZyme
Location: 68608 - 69777 (+)
Type: CAZyme
Location: 68608 - 69777 (+)
Gene ID: HRGMv2_1042_4_68
Type: pfam
Location: 69852 - 70283 (+)
Type: pfam
Location: 69852 - 70283 (+)
Gene ID: HRGMv2_1042_4_69
Type: CAZyme
Location: 70769 - 72565 (+)
Type: CAZyme
Location: 70769 - 72565 (+)
Gene ID: HRGMv2_1042_4_70
Type: TC
Location: 72568 - 73032 (+)
Type: TC
Location: 72568 - 73032 (+)
Gene ID: HRGMv2_1042_4_71
Type: TC
Location: 73126 - 74013 (+)
Type: TC
Location: 73126 - 74013 (+)
Gene ID: HRGMv2_1042_4_72
Type: TC
Location: 74003 - 74842 (+)
Type: TC
Location: 74003 - 74842 (+)
Gene ID: HRGMv2_1042_4_73
Type:
Location: 75031 - 75654 (+)
Type:
Location: 75031 - 75654 (+)
Gene ID: HRGMv2_1042_4_74
Type: TC
Location: 75736 - 76164 (+)
Type: TC
Location: 75736 - 76164 (+)
Gene ID: HRGMv2_1042_4_75
Type: TF
Location: 76252 - 76986 (+)
Type: TF
Location: 76252 - 76986 (+)
Gene ID: HRGMv2_1042_4_76
Type: STP
Location: 77098 - 78264 (+)
Type: STP
Location: 77098 - 78264 (+)
Gene ID: HRGMv2_1042_4_77
Type: CAZyme
Location: 78381 - 79550 (+)
Type: CAZyme
Location: 78381 - 79550 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1042_4_66 | vegetarian > vegan | 3.33603 | 0.01445 |
| HRGMv2_1042_4_69 | vegetarian > vegan | 2.63872 | 0.01445 |
| HRGMv2_1042_4_70 | vegetarian > vegan | 3.21508 | 0.01445 |
| HRGMv2_1042_4_71 | vegetarian > vegan | 2.38868 | 0.04525 |
| HRGMv2_1042_4_72 | vegetarian > vegan | 2.43749 | 0.01445 |