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Cluster: HRGMv2_1042_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1042_18 HRGMv2_1042_18_12 14897 17347 - 4.A.1.1.8
TF HRGMv2_1042_18 HRGMv2_1042_18_13 17577 18296 + GntR
TC HRGMv2_1042_18 HRGMv2_1042_18_14 18603 19919 + 3.A.1.1.45
TC HRGMv2_1042_18 HRGMv2_1042_18_15 20007 20861 + 3.A.1.1.45
TC HRGMv2_1042_18 HRGMv2_1042_18_16 20861 21700 + 3.A.1.1.45
TC HRGMv2_1042_18 HRGMv2_1042_18_17 21769 22968 + 3.A.1.1.22
CAZyme HRGMv2_1042_18 HRGMv2_1042_18_18 23426 25693 - GT35
CAZyme HRGMv2_1042_18 HRGMv2_1042_18_19 25822 27327 - GH77
Gene ID: HRGMv2_1042_18_12
Type: TC
Location: 14897 - 17347 (-)
Gene ID: HRGMv2_1042_18_13
Type: TF
Location: 17577 - 18296 (+)
Gene ID: HRGMv2_1042_18_14
Type: TC
Location: 18603 - 19919 (+)
Gene ID: HRGMv2_1042_18_15
Type: TC
Location: 20007 - 20861 (+)
Gene ID: HRGMv2_1042_18_16
Type: TC
Location: 20861 - 21700 (+)
Gene ID: HRGMv2_1042_18_17
Type: TC
Location: 21769 - 22968 (+)
Gene ID: HRGMv2_1042_18_18
Type: CAZyme
Location: 23426 - 25693 (-)
Gene ID: HRGMv2_1042_18_19
Type: CAZyme
Location: 25822 - 27327 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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