dbCAN HGM

Cluster: HRGMv2_1042_CGC1

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1042_1	HRGMv2_1042_1_6	5286	6749	+	2.A.3.2.3
TC	HRGMv2_1042_1	HRGMv2_1042_1_7	7326	9686	+	9.A.8.1.6
TC	HRGMv2_1042_1	HRGMv2_1042_1_8	10001	11665	+	4.A.1.1.3
TF	HRGMv2_1042_1	HRGMv2_1042_1_9	11728	12480	-	HTH_6
CAZyme	HRGMv2_1042_1	HRGMv2_1042_1_10	12656	14029	+	GH4
NULL(UNKNOWN)	HRGMv2_1042_1	HRGMv2_1042_1_11	14195	14947	+	NULL(UNKNOWN) [View Structural Homologs]
TC	HRGMv2_1042_1	HRGMv2_1042_1_12	15122	16318	+	2.A.1.2.18
CAZyme	HRGMv2_1042_1	HRGMv2_1042_1_13	16475	17851	+	GH13_20

Gene ID: HRGMv2_1042_1_6
Type: TC
Location: 5286 - 6749 (+)

Gene ID: HRGMv2_1042_1_7
Type: TC
Location: 7326 - 9686 (+)

Gene ID: HRGMv2_1042_1_8
Type: TC
Location: 10001 - 11665 (+)

Gene ID: HRGMv2_1042_1_9
Type: TF
Location: 11728 - 12480 (-)

Gene ID: HRGMv2_1042_1_10
Type: CAZyme
Location: 12656 - 14029 (+)

Gene ID: HRGMv2_1042_1_11
Type:
Location: 14195 - 14947 (+)

Gene ID: HRGMv2_1042_1_12
Type: TC
Location: 15122 - 16318 (+)

Gene ID: HRGMv2_1042_1_13
Type: CAZyme
Location: 16475 - 17851 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1042_1_6	vegan > omnivore	1.45107	0.03201
HRGMv2_1042_1_8	vegan > omnivore	1.22086	0.03201
HRGMv2_1042_1_10	vegan > omnivore	1.84854	0.03201
HRGMv2_1042_1_11	vegan > omnivore	2.10862	0.03201