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Cluster: HRGMv2_1041_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1041_40 HRGMv2_1041_40_4 4225 5607 - GH4
TC HRGMv2_1041_40 HRGMv2_1041_40_5 5611 7227 - 4.A.1.1.3
pfam HRGMv2_1041_40 HRGMv2_1041_40_6 7327 8193 - PRD | PRD | CAT_RBD
TC HRGMv2_1041_40 HRGMv2_1041_40_7 8200 8712 - 4.A.1.2.5
STP HRGMv2_1041_40 HRGMv2_1041_40_8 8989 9231 - Fer4 | Fer4
NULL(UNKNOWN) HRGMv2_1041_40 HRGMv2_1041_40_9 9391 9579 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1041_40 HRGMv2_1041_40_10 10407 12644 - 1.I.1.1.3
TC HRGMv2_1041_40 HRGMv2_1041_40_11 13226 15565 + 3.A.3.5.15
Gene ID: HRGMv2_1041_40_4
Type: CAZyme
Location: 4225 - 5607 (-)
Gene ID: HRGMv2_1041_40_5
Type: TC
Location: 5611 - 7227 (-)
Gene ID: HRGMv2_1041_40_6
Type: pfam
Location: 7327 - 8193 (-)
Gene ID: HRGMv2_1041_40_7
Type: TC
Location: 8200 - 8712 (-)
Gene ID: HRGMv2_1041_40_8
Type: STP
Location: 8989 - 9231 (-)
Gene ID: HRGMv2_1041_40_9
Type:
Location: 9391 - 9579 (+)
Gene ID: HRGMv2_1041_40_10
Type: TC
Location: 10407 - 12644 (-)
Gene ID: HRGMv2_1041_40_11
Type: TC
Location: 13226 - 15565 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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