Cluster: HRGMv2_1040_CGC4
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1040
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1040_8 | HRGMv2_1040_8_21 | 21427 | 22134 | + | 1.C.82.1.1 |
| pfam | HRGMv2_1040_8 | HRGMv2_1040_8_22 | 22262 | 22972 | - | Metallophos | Metallophos_2 |
| pfam | HRGMv2_1040_8 | HRGMv2_1040_8_23 | 22969 | 24885 | - | Bmp |
| TC | HRGMv2_1040_8 | HRGMv2_1040_8_24 | 25050 | 25817 | - | 1.A.23.4.10 |
| pfam | HRGMv2_1040_8 | HRGMv2_1040_8_25 | 25947 | 27965 | - | Metallophos | 5_nucleotid_C |
| TC | HRGMv2_1040_8 | HRGMv2_1040_8_26 | 28039 | 28833 | - | 3.A.1.34.1 |
| TC | HRGMv2_1040_8 | HRGMv2_1040_8_27 | 28826 | 29749 | - | 3.A.1.34.1 |
| TC | HRGMv2_1040_8 | HRGMv2_1040_8_28 | 29954 | 30934 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | HRGMv2_1040_8 | HRGMv2_1040_8_29 | 31095 | 31880 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1040_8 | HRGMv2_1040_8_30 | 32130 | 33533 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | HRGMv2_1040_8 | HRGMv2_1040_8_31 | 33715 | 34278 | - | 4.A.1.2.6 |
| peptidase | HRGMv2_1040_8 | HRGMv2_1040_8_32 | 34523 | 35422 | + | S09.UPW |
| NULL(UNKNOWN) | HRGMv2_1040_8 | HRGMv2_1040_8_33 | 35470 | 35790 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1040_8 | HRGMv2_1040_8_34 | 35912 | 38272 | + | 9.A.8.1.6 |
| TC | HRGMv2_1040_8 | HRGMv2_1040_8_35 | 38394 | 39590 | + | 2.A.1.2.18 |
| CAZyme | HRGMv2_1040_8 | HRGMv2_1040_8_36 | 39745 | 41121 | + | GH13_20 |
Gene ID: HRGMv2_1040_8_21
Type: TC
Location: 21427 - 22134 (+)
Type: TC
Location: 21427 - 22134 (+)
Gene ID: HRGMv2_1040_8_22
Type: pfam
Location: 22262 - 22972 (-)
Type: pfam
Location: 22262 - 22972 (-)
Gene ID: HRGMv2_1040_8_23
Type: pfam
Location: 22969 - 24885 (-)
Type: pfam
Location: 22969 - 24885 (-)
Gene ID: HRGMv2_1040_8_24
Type: TC
Location: 25050 - 25817 (-)
Type: TC
Location: 25050 - 25817 (-)
Gene ID: HRGMv2_1040_8_25
Type: pfam
Location: 25947 - 27965 (-)
Type: pfam
Location: 25947 - 27965 (-)
Gene ID: HRGMv2_1040_8_26
Type: TC
Location: 28039 - 28833 (-)
Type: TC
Location: 28039 - 28833 (-)
Gene ID: HRGMv2_1040_8_27
Type: TC
Location: 28826 - 29749 (-)
Type: TC
Location: 28826 - 29749 (-)
Gene ID: HRGMv2_1040_8_28
Type: TC
Location: 29954 - 30934 (-)
Type: TC
Location: 29954 - 30934 (-)
Gene ID: HRGMv2_1040_8_29
Type:
Location: 31095 - 31880 (-)
Type:
Location: 31095 - 31880 (-)
Gene ID: HRGMv2_1040_8_30
Type: pfam
Location: 32130 - 33533 (-)
Type: pfam
Location: 32130 - 33533 (-)
Gene ID: HRGMv2_1040_8_31
Type: TC
Location: 33715 - 34278 (-)
Type: TC
Location: 33715 - 34278 (-)
Gene ID: HRGMv2_1040_8_32
Type: peptidase
Location: 34523 - 35422 (+)
Type: peptidase
Location: 34523 - 35422 (+)
Gene ID: HRGMv2_1040_8_33
Type:
Location: 35470 - 35790 (+)
Type:
Location: 35470 - 35790 (+)
Gene ID: HRGMv2_1040_8_34
Type: TC
Location: 35912 - 38272 (+)
Type: TC
Location: 35912 - 38272 (+)
Gene ID: HRGMv2_1040_8_35
Type: TC
Location: 38394 - 39590 (+)
Type: TC
Location: 38394 - 39590 (+)
Gene ID: HRGMv2_1040_8_36
Type: CAZyme
Location: 39745 - 41121 (+)
Type: CAZyme
Location: 39745 - 41121 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1040_8_25 | vegan > omnivore | 2.04832 | 0.01165 |
| HRGMv2_1040_8_25 | vegetarian > omnivore | 1.48981 | 0.01057 |