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Cluster: HRGMv2_1040_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1040_4 HRGMv2_1040_4_40 39899 41404 + GH77
CAZyme HRGMv2_1040_4 HRGMv2_1040_4_41 41533 43800 + GT35
TC HRGMv2_1040_4 HRGMv2_1040_4_42 44257 45456 - 3.A.1.1.22
TC HRGMv2_1040_4 HRGMv2_1040_4_43 45525 46364 - 3.A.1.1.45
TC HRGMv2_1040_4 HRGMv2_1040_4_44 46364 47218 - 3.A.1.1.45
TC HRGMv2_1040_4 HRGMv2_1040_4_45 47306 48622 - 3.A.1.1.45
TF HRGMv2_1040_4 HRGMv2_1040_4_46 48929 49648 - GntR
NULL(UNKNOWN) HRGMv2_1040_4 HRGMv2_1040_4_47 49732 49851 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1040_4 HRGMv2_1040_4_48 49873 52323 + 4.A.1.1.8
Gene ID: HRGMv2_1040_4_40
Type: CAZyme
Location: 39899 - 41404 (+)
Gene ID: HRGMv2_1040_4_41
Type: CAZyme
Location: 41533 - 43800 (+)
Gene ID: HRGMv2_1040_4_42
Type: TC
Location: 44257 - 45456 (-)
Gene ID: HRGMv2_1040_4_43
Type: TC
Location: 45525 - 46364 (-)
Gene ID: HRGMv2_1040_4_44
Type: TC
Location: 46364 - 47218 (-)
Gene ID: HRGMv2_1040_4_45
Type: TC
Location: 47306 - 48622 (-)
Gene ID: HRGMv2_1040_4_46
Type: TF
Location: 48929 - 49648 (-)
Gene ID: HRGMv2_1040_4_47
Type:
Location: 49732 - 49851 (-)
Gene ID: HRGMv2_1040_4_48
Type: TC
Location: 49873 - 52323 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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