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Cluster: HRGMv2_1040_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1040_46 HRGMv2_1040_46_1 1 1785 - 3.A.3.5.15
STP HRGMv2_1040_46 HRGMv2_1040_46_2 2199 4283 - Pkinase
STP HRGMv2_1040_46 HRGMv2_1040_46_3 4455 5417 - FHA
TC HRGMv2_1040_46 HRGMv2_1040_46_4 6017 8230 + 1.I.1.1.3
TC HRGMv2_1040_46 HRGMv2_1040_46_5 8675 9187 + 4.A.1.2.2
pfam HRGMv2_1040_46 HRGMv2_1040_46_6 9206 10060 + PRD | PRD | CAT_RBD
TC HRGMv2_1040_46 HRGMv2_1040_46_7 10160 11776 + 4.A.1.1.3
CAZyme HRGMv2_1040_46 HRGMv2_1040_46_8 11780 13162 + GH4
STP HRGMv2_1040_46 HRGMv2_1040_46_9 13419 15251 + Pyr_redox_2
TC HRGMv2_1040_46 HRGMv2_1040_46_10 15245 17056 + 3.D.1.5.1
Gene ID: HRGMv2_1040_46_1
Type: TC
Location: 1 - 1785 (-)
Gene ID: HRGMv2_1040_46_2
Type: STP
Location: 2199 - 4283 (-)
Gene ID: HRGMv2_1040_46_3
Type: STP
Location: 4455 - 5417 (-)
Gene ID: HRGMv2_1040_46_4
Type: TC
Location: 6017 - 8230 (+)
Gene ID: HRGMv2_1040_46_5
Type: TC
Location: 8675 - 9187 (+)
Gene ID: HRGMv2_1040_46_6
Type: pfam
Location: 9206 - 10060 (+)
Gene ID: HRGMv2_1040_46_7
Type: TC
Location: 10160 - 11776 (+)
Gene ID: HRGMv2_1040_46_8
Type: CAZyme
Location: 11780 - 13162 (+)
Gene ID: HRGMv2_1040_46_9
Type: STP
Location: 13419 - 15251 (+)
Gene ID: HRGMv2_1040_46_10
Type: TC
Location: 15245 - 17056 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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