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Cluster: HRGMv2_1040_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1040_39 HRGMv2_1040_39_12 11137 12558 - GH1
TC HRGMv2_1040_39 HRGMv2_1040_39_13 12635 14413 - 4.A.3.1.1
TF HRGMv2_1040_39 HRGMv2_1040_39_14 14689 15699 + LacI
TC HRGMv2_1040_39 HRGMv2_1040_39_15 16033 17793 - 4.A.3.1.1
CAZyme HRGMv2_1040_39 HRGMv2_1040_39_16 17970 19412 - GH1
TF HRGMv2_1040_39 HRGMv2_1040_39_17 19754 20791 + LacI
CAZyme HRGMv2_1040_39 HRGMv2_1040_39_18 21058 22497 - GH1
TC HRGMv2_1040_39 HRGMv2_1040_39_19 22694 23566 - 4.A.3.1.1
Gene ID: HRGMv2_1040_39_12
Type: CAZyme
Location: 11137 - 12558 (-)
Gene ID: HRGMv2_1040_39_13
Type: TC
Location: 12635 - 14413 (-)
Gene ID: HRGMv2_1040_39_14
Type: TF
Location: 14689 - 15699 (+)
Gene ID: HRGMv2_1040_39_15
Type: TC
Location: 16033 - 17793 (-)
Gene ID: HRGMv2_1040_39_16
Type: CAZyme
Location: 17970 - 19412 (-)
Gene ID: HRGMv2_1040_39_17
Type: TF
Location: 19754 - 20791 (+)
Gene ID: HRGMv2_1040_39_18
Type: CAZyme
Location: 21058 - 22497 (-)
Gene ID: HRGMv2_1040_39_19
Type: TC
Location: 22694 - 23566 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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