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Cluster: HRGMv2_1038_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1038_49 HRGMv2_1038_49_5 2828 3997 - CE9
STP HRGMv2_1038_49 HRGMv2_1038_49_6 4116 5282 - SIS | SIS
TF HRGMv2_1038_49 HRGMv2_1038_49_7 5397 6128 - GntR
TC HRGMv2_1038_49 HRGMv2_1038_49_8 6314 7396 - 4.A.6.1.4
TC HRGMv2_1038_49 HRGMv2_1038_49_9 7386 8186 - 4.A.6.1.4
TC HRGMv2_1038_49 HRGMv2_1038_49_10 8277 8759 - 4.A.6.1.4
pfam HRGMv2_1038_49 HRGMv2_1038_49_11 8796 9077 - YajC
TC HRGMv2_1038_49 HRGMv2_1038_49_12 9077 9520 - 4.A.6.1.16
Gene ID: HRGMv2_1038_49_5
Type: CAZyme
Location: 2828 - 3997 (-)
Gene ID: HRGMv2_1038_49_6
Type: STP
Location: 4116 - 5282 (-)
Gene ID: HRGMv2_1038_49_7
Type: TF
Location: 5397 - 6128 (-)
Gene ID: HRGMv2_1038_49_8
Type: TC
Location: 6314 - 7396 (-)
Gene ID: HRGMv2_1038_49_9
Type: TC
Location: 7386 - 8186 (-)
Gene ID: HRGMv2_1038_49_10
Type: TC
Location: 8277 - 8759 (-)
Gene ID: HRGMv2_1038_49_11
Type: pfam
Location: 8796 - 9077 (-)
Gene ID: HRGMv2_1038_49_12
Type: TC
Location: 9077 - 9520 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1038_49_11 vegan > omnivore 1.07509 0.01416

🧭 Explore Read Mapping of CGC

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