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Cluster: HRGMv2_1038_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1038_1 HRGMv2_1038_1_176 224122 225498 - 3.A.1.17.10
pfam HRGMv2_1038_1 HRGMv2_1038_1_177 225502 226560 - NMT1
TC HRGMv2_1038_1 HRGMv2_1038_1_178 226563 228374 - 3.D.1.5.1
STP HRGMv2_1038_1 HRGMv2_1038_1_179 228368 230200 - Pyr_redox_2
CAZyme HRGMv2_1038_1 HRGMv2_1038_1_180 230457 231839 - GH4
TC HRGMv2_1038_1 HRGMv2_1038_1_181 231843 233459 - 4.A.1.1.3
pfam HRGMv2_1038_1 HRGMv2_1038_1_182 233560 234426 - PRD | PRD | CAT_RBD
TC HRGMv2_1038_1 HRGMv2_1038_1_183 234433 234945 - 4.A.1.2.5
TC HRGMv2_1038_1 HRGMv2_1038_1_184 235340 237463 - 1.I.1.1.3
TC HRGMv2_1038_1 HRGMv2_1038_1_185 238023 240362 + 3.A.3.5.15
Gene ID: HRGMv2_1038_1_176
Type: TC
Location: 224122 - 225498 (-)
Gene ID: HRGMv2_1038_1_177
Type: pfam
Location: 225502 - 226560 (-)
Gene ID: HRGMv2_1038_1_178
Type: TC
Location: 226563 - 228374 (-)
Gene ID: HRGMv2_1038_1_179
Type: STP
Location: 228368 - 230200 (-)
Gene ID: HRGMv2_1038_1_180
Type: CAZyme
Location: 230457 - 231839 (-)
Gene ID: HRGMv2_1038_1_181
Type: TC
Location: 231843 - 233459 (-)
Gene ID: HRGMv2_1038_1_182
Type: pfam
Location: 233560 - 234426 (-)
Gene ID: HRGMv2_1038_1_183
Type: TC
Location: 234433 - 234945 (-)
Gene ID: HRGMv2_1038_1_184
Type: TC
Location: 235340 - 237463 (-)
Gene ID: HRGMv2_1038_1_185
Type: TC
Location: 238023 - 240362 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1038_1_176 vegan > omnivore 1.11921 0.01416

🧭 Explore Read Mapping of CGC

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