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Cluster: HRGMv2_1035_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1035_24 HRGMv2_1035_24_10 14036 15412 - GH13_20
TC HRGMv2_1035_24 HRGMv2_1035_24_11 15878 17074 - 2.A.1.2.18
pfam HRGMv2_1035_24 HRGMv2_1035_24_12 17178 17660 - tRNA_edit
TC HRGMv2_1035_24 HRGMv2_1035_24_13 17757 20114 - 9.A.8.1.6
peptidase HRGMv2_1035_24 HRGMv2_1035_24_14 20622 21521 - S09.UPW
TC HRGMv2_1035_24 HRGMv2_1035_24_15 21764 22327 + 4.A.1.2.6
pfam HRGMv2_1035_24 HRGMv2_1035_24_16 22508 23911 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1035_24 HRGMv2_1035_24_17 24162 24950 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1035_24 HRGMv2_1035_24_18 25109 26089 + 3.A.1.34.1
TC HRGMv2_1035_24 HRGMv2_1035_24_19 26294 27217 + 3.A.1.34.1
TC HRGMv2_1035_24 HRGMv2_1035_24_20 27210 28004 + 3.A.1.34.1
pfam HRGMv2_1035_24 HRGMv2_1035_24_21 28078 30108 + Metallophos | 5_nucleotid_C
TC HRGMv2_1035_24 HRGMv2_1035_24_22 30238 31005 + 1.A.23.4.10
Gene ID: HRGMv2_1035_24_10
Type: CAZyme
Location: 14036 - 15412 (-)
Gene ID: HRGMv2_1035_24_11
Type: TC
Location: 15878 - 17074 (-)
Gene ID: HRGMv2_1035_24_12
Type: pfam
Location: 17178 - 17660 (-)
Gene ID: HRGMv2_1035_24_13
Type: TC
Location: 17757 - 20114 (-)
Gene ID: HRGMv2_1035_24_14
Type: peptidase
Location: 20622 - 21521 (-)
Gene ID: HRGMv2_1035_24_15
Type: TC
Location: 21764 - 22327 (+)
Gene ID: HRGMv2_1035_24_16
Type: pfam
Location: 22508 - 23911 (+)
Gene ID: HRGMv2_1035_24_17
Type:
Location: 24162 - 24950 (+)
Gene ID: HRGMv2_1035_24_18
Type: TC
Location: 25109 - 26089 (+)
Gene ID: HRGMv2_1035_24_19
Type: TC
Location: 26294 - 27217 (+)
Gene ID: HRGMv2_1035_24_20
Type: TC
Location: 27210 - 28004 (+)
Gene ID: HRGMv2_1035_24_21
Type: pfam
Location: 28078 - 30108 (+)
Gene ID: HRGMv2_1035_24_22
Type: TC
Location: 30238 - 31005 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1035_24_16 vegetarian > vegan 1.03253 0.00229
HRGMv2_1035_24_21 vegan > omnivore 2.19992 0.01165
HRGMv2_1035_24_21 vegetarian > omnivore 1.54325 0.00455

🧭 Explore Read Mapping of CGC

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