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Cluster: HRGMv2_1035_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1035_8 HRGMv2_1035_8_22 31196 32572 - 3.A.1.17.6
pfam HRGMv2_1035_8 HRGMv2_1035_8_23 32576 33634 - NMT1
TC HRGMv2_1035_8 HRGMv2_1035_8_24 33637 35448 - 3.D.1.5.1
STP HRGMv2_1035_8 HRGMv2_1035_8_25 35442 37274 - Pyr_redox_2
CAZyme HRGMv2_1035_8 HRGMv2_1035_8_26 37609 38991 - GH4
TC HRGMv2_1035_8 HRGMv2_1035_8_27 38995 40611 - 4.A.1.1.3
pfam HRGMv2_1035_8 HRGMv2_1035_8_28 40711 41565 - PRD | PRD | CAT_RBD
TC HRGMv2_1035_8 HRGMv2_1035_8_29 41584 42096 - 4.A.1.2.5
TC HRGMv2_1035_8 HRGMv2_1035_8_30 42487 44685 - 1.I.1.1.3
STP HRGMv2_1035_8 HRGMv2_1035_8_31 45363 46325 + FHA
STP HRGMv2_1035_8 HRGMv2_1035_8_32 46494 48578 + Pkinase
TC HRGMv2_1035_8 HRGMv2_1035_8_33 48829 50247 + 3.A.3.5.15
Gene ID: HRGMv2_1035_8_22
Type: TC
Location: 31196 - 32572 (-)
Gene ID: HRGMv2_1035_8_23
Type: pfam
Location: 32576 - 33634 (-)
Gene ID: HRGMv2_1035_8_24
Type: TC
Location: 33637 - 35448 (-)
Gene ID: HRGMv2_1035_8_25
Type: STP
Location: 35442 - 37274 (-)
Gene ID: HRGMv2_1035_8_26
Type: CAZyme
Location: 37609 - 38991 (-)
Gene ID: HRGMv2_1035_8_27
Type: TC
Location: 38995 - 40611 (-)
Gene ID: HRGMv2_1035_8_28
Type: pfam
Location: 40711 - 41565 (-)
Gene ID: HRGMv2_1035_8_29
Type: TC
Location: 41584 - 42096 (-)
Gene ID: HRGMv2_1035_8_30
Type: TC
Location: 42487 - 44685 (-)
Gene ID: HRGMv2_1035_8_31
Type: STP
Location: 45363 - 46325 (+)
Gene ID: HRGMv2_1035_8_32
Type: STP
Location: 46494 - 48578 (+)
Gene ID: HRGMv2_1035_8_33
Type: TC
Location: 48829 - 50247 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1035_8_22 vegan > omnivore 1.33315 0.01165
HRGMv2_1035_8_23 vegan > omnivore 1.10840 0.01165

🧭 Explore Read Mapping of CGC

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