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Cluster: HRGMv2_1035_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1035_28 HRGMv2_1035_28_5 7603 10056 - 4.A.1.1.8
TF HRGMv2_1035_28 HRGMv2_1035_28_6 10285 11004 + GntR
TC HRGMv2_1035_28 HRGMv2_1035_28_7 11311 12627 + 3.A.1.1.45
TC HRGMv2_1035_28 HRGMv2_1035_28_8 12715 13569 + 3.A.1.1.45
TC HRGMv2_1035_28 HRGMv2_1035_28_9 13569 14408 + 3.A.1.1.45
TC HRGMv2_1035_28 HRGMv2_1035_28_10 14477 15673 + 3.A.1.1.22
CAZyme HRGMv2_1035_28 HRGMv2_1035_28_11 16128 18395 - GT35
CAZyme HRGMv2_1035_28 HRGMv2_1035_28_12 18523 20028 - GH77
Gene ID: HRGMv2_1035_28_5
Type: TC
Location: 7603 - 10056 (-)
Gene ID: HRGMv2_1035_28_6
Type: TF
Location: 10285 - 11004 (+)
Gene ID: HRGMv2_1035_28_7
Type: TC
Location: 11311 - 12627 (+)
Gene ID: HRGMv2_1035_28_8
Type: TC
Location: 12715 - 13569 (+)
Gene ID: HRGMv2_1035_28_9
Type: TC
Location: 13569 - 14408 (+)
Gene ID: HRGMv2_1035_28_10
Type: TC
Location: 14477 - 15673 (+)
Gene ID: HRGMv2_1035_28_11
Type: CAZyme
Location: 16128 - 18395 (-)
Gene ID: HRGMv2_1035_28_12
Type: CAZyme
Location: 18523 - 20028 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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