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Cluster: HRGMv2_1035_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1035_3 HRGMv2_1035_3_12 12113 13594 + 3.A.1.8.1
TC HRGMv2_1035_3 HRGMv2_1035_3_13 13598 14668 + 3.A.1.1.3
pfam HRGMv2_1035_3 HRGMv2_1035_3_14 15114 16397 + HGD-D
pfam HRGMv2_1035_3 HRGMv2_1035_3_15 16551 17714 + HGD-D
TC HRGMv2_1035_3 HRGMv2_1035_3_16 17799 19388 + 3.A.1.5.20
TC HRGMv2_1035_3 HRGMv2_1035_3_17 19480 20460 + 3.A.1.5.20
TC HRGMv2_1035_3 HRGMv2_1035_3_18 20453 21289 + 3.A.1.5.20
TC HRGMv2_1035_3 HRGMv2_1035_3_19 21297 22274 + 3.A.1.5.2
TC HRGMv2_1035_3 HRGMv2_1035_3_20 22276 23232 + 3.A.1.5.37
pfam HRGMv2_1035_3 HRGMv2_1035_3_21 23282 24046 + BcrAD_BadFG
CAZyme HRGMv2_1035_3 HRGMv2_1035_3_22 24059 25303 + GT4
Gene ID: HRGMv2_1035_3_12
Type: TC
Location: 12113 - 13594 (+)
Gene ID: HRGMv2_1035_3_13
Type: TC
Location: 13598 - 14668 (+)
Gene ID: HRGMv2_1035_3_14
Type: pfam
Location: 15114 - 16397 (+)
Gene ID: HRGMv2_1035_3_15
Type: pfam
Location: 16551 - 17714 (+)
Gene ID: HRGMv2_1035_3_16
Type: TC
Location: 17799 - 19388 (+)
Gene ID: HRGMv2_1035_3_17
Type: TC
Location: 19480 - 20460 (+)
Gene ID: HRGMv2_1035_3_18
Type: TC
Location: 20453 - 21289 (+)
Gene ID: HRGMv2_1035_3_19
Type: TC
Location: 21297 - 22274 (+)
Gene ID: HRGMv2_1035_3_20
Type: TC
Location: 22276 - 23232 (+)
Gene ID: HRGMv2_1035_3_21
Type: pfam
Location: 23282 - 24046 (+)
Gene ID: HRGMv2_1035_3_22
Type: CAZyme
Location: 24059 - 25303 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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