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Cluster: HRGMv2_1034_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1034_47 HRGMv2_1034_47_1 1 219 - 4.A.3.1.1
CAZyme HRGMv2_1034_47 HRGMv2_1034_47_2 396 1838 - GH1
TF HRGMv2_1034_47 HRGMv2_1034_47_3 2180 3217 + LacI
CAZyme HRGMv2_1034_47 HRGMv2_1034_47_4 3485 4924 - GH1
CAZyme HRGMv2_1034_47 HRGMv2_1034_47_5 5207 6646 + GH1
TF HRGMv2_1034_47 HRGMv2_1034_47_6 6914 7951 - LacI
CAZyme HRGMv2_1034_47 HRGMv2_1034_47_7 8293 9735 + GH1
TC HRGMv2_1034_47 HRGMv2_1034_47_8 9912 10130 + 4.A.3.1.1
Gene ID: HRGMv2_1034_47_1
Type: TC
Location: 1 - 219 (-)
Gene ID: HRGMv2_1034_47_2
Type: CAZyme
Location: 396 - 1838 (-)
Gene ID: HRGMv2_1034_47_3
Type: TF
Location: 2180 - 3217 (+)
Gene ID: HRGMv2_1034_47_4
Type: CAZyme
Location: 3485 - 4924 (-)
Gene ID: HRGMv2_1034_47_5
Type: CAZyme
Location: 5207 - 6646 (+)
Gene ID: HRGMv2_1034_47_6
Type: TF
Location: 6914 - 7951 (-)
Gene ID: HRGMv2_1034_47_7
Type: CAZyme
Location: 8293 - 9735 (+)
Gene ID: HRGMv2_1034_47_8
Type: TC
Location: 9912 - 10130 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1034_47_1 vegetarian > omnivore 1.01840 0.02024

🧭 Explore Read Mapping of CGC

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