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Cluster: HRGMv2_1033_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1033_11 HRGMv2_1033_11_6 12082 12912 - 3.A.1.132.3
pfam HRGMv2_1033_11 HRGMv2_1033_11_7 13168 16047 + UvrA_DNA-bind | UvrA_inter
pfam HRGMv2_1033_11 HRGMv2_1033_11_8 16182 16682 + tRNA_edit
TC HRGMv2_1033_11 HRGMv2_1033_11_9 16686 18989 + 2.A.66.4.4
pfam HRGMv2_1033_11 HRGMv2_1033_11_10 18996 20936 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1033_11 HRGMv2_1033_11_11 21302 22915 + 3.A.1.5.27
TC HRGMv2_1033_11 HRGMv2_1033_11_12 23071 24027 + 3.A.1.5.38
TC HRGMv2_1033_11 HRGMv2_1033_11_13 24031 26046 + 3.A.1.5.25
TC HRGMv2_1033_11 HRGMv2_1033_11_14 26047 26874 + 3.A.1.5.27
CAZyme HRGMv2_1033_11 HRGMv2_1033_11_15 27048 27932 + CE7
Gene ID: HRGMv2_1033_11_6
Type: TC
Location: 12082 - 12912 (-)
Gene ID: HRGMv2_1033_11_7
Type: pfam
Location: 13168 - 16047 (+)
Gene ID: HRGMv2_1033_11_8
Type: pfam
Location: 16182 - 16682 (+)
Gene ID: HRGMv2_1033_11_9
Type: TC
Location: 16686 - 18989 (+)
Gene ID: HRGMv2_1033_11_10
Type: pfam
Location: 18996 - 20936 (+)
Gene ID: HRGMv2_1033_11_11
Type: TC
Location: 21302 - 22915 (+)
Gene ID: HRGMv2_1033_11_12
Type: TC
Location: 23071 - 24027 (+)
Gene ID: HRGMv2_1033_11_13
Type: TC
Location: 24031 - 26046 (+)
Gene ID: HRGMv2_1033_11_14
Type: TC
Location: 26047 - 26874 (+)
Gene ID: HRGMv2_1033_11_15
Type: CAZyme
Location: 27048 - 27932 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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