Cluster: HRGMv2_1033_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1033
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1033_8 | HRGMv2_1033_8_1 | 1 | 1635 | - | GH13_29 |
| TC | HRGMv2_1033_8 | HRGMv2_1033_8_2 | 1734 | 3209 | - | 4.A.1.2.13 |
| TF | HRGMv2_1033_8 | HRGMv2_1033_8_3 | 3442 | 4158 | + | GntR |
| TC | HRGMv2_1033_8 | HRGMv2_1033_8_4 | 4246 | 5925 | - | 3.A.1.120.6 |
| TF | HRGMv2_1033_8 | HRGMv2_1033_8_5 | 6186 | 6653 | + | MarR |
| TC | HRGMv2_1033_8 | HRGMv2_1033_8_6 | 6781 | 8550 | + | 3.A.1.135.6 |
| TC | HRGMv2_1033_8 | HRGMv2_1033_8_7 | 8543 | 10339 | + | 3.A.1.135.6 |
Gene ID: HRGMv2_1033_8_1
Type: CAZyme
Location: 1 - 1635 (-)
Type: CAZyme
Location: 1 - 1635 (-)
Gene ID: HRGMv2_1033_8_2
Type: TC
Location: 1734 - 3209 (-)
Type: TC
Location: 1734 - 3209 (-)
Gene ID: HRGMv2_1033_8_3
Type: TF
Location: 3442 - 4158 (+)
Type: TF
Location: 3442 - 4158 (+)
Gene ID: HRGMv2_1033_8_4
Type: TC
Location: 4246 - 5925 (-)
Type: TC
Location: 4246 - 5925 (-)
Gene ID: HRGMv2_1033_8_5
Type: TF
Location: 6186 - 6653 (+)
Type: TF
Location: 6186 - 6653 (+)
Gene ID: HRGMv2_1033_8_6
Type: TC
Location: 6781 - 8550 (+)
Type: TC
Location: 6781 - 8550 (+)
Gene ID: HRGMv2_1033_8_7
Type: TC
Location: 8543 - 10339 (+)
Type: TC
Location: 8543 - 10339 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.