Cluster: HRGMv2_1033_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1033
- CGC Family ID: CGCFAM_01153
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1033_39 | HRGMv2_1033_39_1 | 2 | 1660 | + | 4.A.1.1.3 |
| CAZyme | HRGMv2_1033_39 | HRGMv2_1033_39_2 | 1664 | 3046 | + | GH4 |
| STP | HRGMv2_1033_39 | HRGMv2_1033_39_3 | 3407 | 5239 | + | Pyr_redox_2 |
| TC | HRGMv2_1033_39 | HRGMv2_1033_39_4 | 5233 | 7044 | + | 3.D.1.5.1 |
| pfam | HRGMv2_1033_39 | HRGMv2_1033_39_5 | 7047 | 8105 | + | NMT1 |
| TC | HRGMv2_1033_39 | HRGMv2_1033_39_6 | 8109 | 9485 | + | 3.A.1.17.10 |
Gene ID: HRGMv2_1033_39_1
Type: TC
Location: 2 - 1660 (+)
Type: TC
Location: 2 - 1660 (+)
Gene ID: HRGMv2_1033_39_2
Type: CAZyme
Location: 1664 - 3046 (+)
Type: CAZyme
Location: 1664 - 3046 (+)
Gene ID: HRGMv2_1033_39_3
Type: STP
Location: 3407 - 5239 (+)
Type: STP
Location: 3407 - 5239 (+)
Gene ID: HRGMv2_1033_39_4
Type: TC
Location: 5233 - 7044 (+)
Type: TC
Location: 5233 - 7044 (+)
Gene ID: HRGMv2_1033_39_5
Type: pfam
Location: 7047 - 8105 (+)
Type: pfam
Location: 7047 - 8105 (+)
Gene ID: HRGMv2_1033_39_6
Type: TC
Location: 8109 - 9485 (+)
Type: TC
Location: 8109 - 9485 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1033_39_6 | vegan > omnivore | 1.08063 | 0.01287 |