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Cluster: HRGMv2_1032_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1032_4 HRGMv2_1032_4_9 11128 13467 - 3.A.3.5.15
TC HRGMv2_1032_4 HRGMv2_1032_4_10 13946 16198 + 1.I.1.1.3
TC HRGMv2_1032_4 HRGMv2_1032_4_11 16646 17158 + 4.A.1.2.5
pfam HRGMv2_1032_4 HRGMv2_1032_4_12 17165 18031 + PRD | PRD | CAT_RBD
TC HRGMv2_1032_4 HRGMv2_1032_4_13 18132 19748 + 4.A.1.1.3
CAZyme HRGMv2_1032_4 HRGMv2_1032_4_14 19752 21134 + GH4
STP HRGMv2_1032_4 HRGMv2_1032_4_15 21391 23223 + Pyr_redox_2
TC HRGMv2_1032_4 HRGMv2_1032_4_16 23217 25028 + 3.D.1.5.1
pfam HRGMv2_1032_4 HRGMv2_1032_4_17 25031 26089 + NMT1
TC HRGMv2_1032_4 HRGMv2_1032_4_18 26093 27469 + 3.A.1.17.10
Gene ID: HRGMv2_1032_4_9
Type: TC
Location: 11128 - 13467 (-)
Gene ID: HRGMv2_1032_4_10
Type: TC
Location: 13946 - 16198 (+)
Gene ID: HRGMv2_1032_4_11
Type: TC
Location: 16646 - 17158 (+)
Gene ID: HRGMv2_1032_4_12
Type: pfam
Location: 17165 - 18031 (+)
Gene ID: HRGMv2_1032_4_13
Type: TC
Location: 18132 - 19748 (+)
Gene ID: HRGMv2_1032_4_14
Type: CAZyme
Location: 19752 - 21134 (+)
Gene ID: HRGMv2_1032_4_15
Type: STP
Location: 21391 - 23223 (+)
Gene ID: HRGMv2_1032_4_16
Type: TC
Location: 23217 - 25028 (+)
Gene ID: HRGMv2_1032_4_17
Type: pfam
Location: 25031 - 26089 (+)
Gene ID: HRGMv2_1032_4_18
Type: TC
Location: 26093 - 27469 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1032_4_17 vegan > omnivore 1.06204 0.00701
HRGMv2_1032_4_18 vegan > omnivore 1.28505 0.00701

🧭 Explore Read Mapping of CGC

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