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Cluster: HRGMv2_1032_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1032_27 HRGMv2_1032_27_2 733 2238 + GH77
CAZyme HRGMv2_1032_27 HRGMv2_1032_27_3 2368 4635 + GT35
TC HRGMv2_1032_27 HRGMv2_1032_27_4 5105 6301 - 3.A.1.1.22
TC HRGMv2_1032_27 HRGMv2_1032_27_5 6370 7209 - 3.A.1.1.45
TC HRGMv2_1032_27 HRGMv2_1032_27_6 7209 8063 - 3.A.1.1.45
TC HRGMv2_1032_27 HRGMv2_1032_27_7 8151 9467 - 3.A.1.1.45
TF HRGMv2_1032_27 HRGMv2_1032_27_8 9772 10491 - GntR
TC HRGMv2_1032_27 HRGMv2_1032_27_9 10719 13172 + 4.A.1.1.8
Gene ID: HRGMv2_1032_27_2
Type: CAZyme
Location: 733 - 2238 (+)
Gene ID: HRGMv2_1032_27_3
Type: CAZyme
Location: 2368 - 4635 (+)
Gene ID: HRGMv2_1032_27_4
Type: TC
Location: 5105 - 6301 (-)
Gene ID: HRGMv2_1032_27_5
Type: TC
Location: 6370 - 7209 (-)
Gene ID: HRGMv2_1032_27_6
Type: TC
Location: 7209 - 8063 (-)
Gene ID: HRGMv2_1032_27_7
Type: TC
Location: 8151 - 9467 (-)
Gene ID: HRGMv2_1032_27_8
Type: TF
Location: 9772 - 10491 (-)
Gene ID: HRGMv2_1032_27_9
Type: TC
Location: 10719 - 13172 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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