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Cluster: HRGMv2_1032_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1032_24 HRGMv2_1032_24_6 3541 4710 - CE9
STP HRGMv2_1032_24 HRGMv2_1032_24_7 4828 5994 - SIS | SIS
TF HRGMv2_1032_24 HRGMv2_1032_24_8 6109 6840 - GntR
TC HRGMv2_1032_24 HRGMv2_1032_24_9 7025 8107 - 4.A.6.1.4
TC HRGMv2_1032_24 HRGMv2_1032_24_10 8097 8897 - 4.A.6.1.4
TC HRGMv2_1032_24 HRGMv2_1032_24_11 8988 9470 - 4.A.6.1.4
pfam HRGMv2_1032_24 HRGMv2_1032_24_12 9507 9788 - YajC
TC HRGMv2_1032_24 HRGMv2_1032_24_13 9788 10231 - 4.A.6.1.16
Gene ID: HRGMv2_1032_24_6
Type: CAZyme
Location: 3541 - 4710 (-)
Gene ID: HRGMv2_1032_24_7
Type: STP
Location: 4828 - 5994 (-)
Gene ID: HRGMv2_1032_24_8
Type: TF
Location: 6109 - 6840 (-)
Gene ID: HRGMv2_1032_24_9
Type: TC
Location: 7025 - 8107 (-)
Gene ID: HRGMv2_1032_24_10
Type: TC
Location: 8097 - 8897 (-)
Gene ID: HRGMv2_1032_24_11
Type: TC
Location: 8988 - 9470 (-)
Gene ID: HRGMv2_1032_24_12
Type: pfam
Location: 9507 - 9788 (-)
Gene ID: HRGMv2_1032_24_13
Type: TC
Location: 9788 - 10231 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1032_24_12 vegan > omnivore 1.20244 0.00701

🧭 Explore Read Mapping of CGC

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