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Cluster: HRGMv2_1032_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1032_20 HRGMv2_1032_20_8 8996 9790 - 3.A.1.34.1
TC HRGMv2_1032_20 HRGMv2_1032_20_9 9783 10706 - 3.A.1.34.1
TC HRGMv2_1032_20 HRGMv2_1032_20_10 10911 11891 - 3.A.1.34.1
pfam HRGMv2_1032_20 HRGMv2_1032_20_11 12051 12839 - WYL
pfam HRGMv2_1032_20 HRGMv2_1032_20_12 13089 14492 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1032_20 HRGMv2_1032_20_13 14629 16563 - 9.B.97.5.1
TC HRGMv2_1032_20 HRGMv2_1032_20_14 16799 17440 - 4.A.1.2.6
peptidase HRGMv2_1032_20 HRGMv2_1032_20_15 17609 18508 + S09.UPW
NULL(UNKNOWN) HRGMv2_1032_20 HRGMv2_1032_20_16 18556 18876 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1032_20 HRGMv2_1032_20_17 18998 21355 + 9.A.8.1.6
pfam HRGMv2_1032_20 HRGMv2_1032_20_18 21451 21933 + tRNA_edit
TC HRGMv2_1032_20 HRGMv2_1032_20_19 22037 23233 + 2.A.1.2.18
CAZyme HRGMv2_1032_20 HRGMv2_1032_20_20 23415 24791 + GH13_20
Gene ID: HRGMv2_1032_20_8
Type: TC
Location: 8996 - 9790 (-)
Gene ID: HRGMv2_1032_20_9
Type: TC
Location: 9783 - 10706 (-)
Gene ID: HRGMv2_1032_20_10
Type: TC
Location: 10911 - 11891 (-)
Gene ID: HRGMv2_1032_20_11
Type: pfam
Location: 12051 - 12839 (-)
Gene ID: HRGMv2_1032_20_12
Type: pfam
Location: 13089 - 14492 (-)
Gene ID: HRGMv2_1032_20_13
Type: TC
Location: 14629 - 16563 (-)
Gene ID: HRGMv2_1032_20_14
Type: TC
Location: 16799 - 17440 (-)
Gene ID: HRGMv2_1032_20_15
Type: peptidase
Location: 17609 - 18508 (+)
Gene ID: HRGMv2_1032_20_16
Type:
Location: 18556 - 18876 (+)
Gene ID: HRGMv2_1032_20_17
Type: TC
Location: 18998 - 21355 (+)
Gene ID: HRGMv2_1032_20_18
Type: pfam
Location: 21451 - 21933 (+)
Gene ID: HRGMv2_1032_20_19
Type: TC
Location: 22037 - 23233 (+)
Gene ID: HRGMv2_1032_20_20
Type: CAZyme
Location: 23415 - 24791 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1032_20_13 vegan > omnivore 1.33349 0.00701

🧭 Explore Read Mapping of CGC

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