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Cluster: HRGMv2_1031_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1031_3 HRGMv2_1031_3_54 59732 60901 - CE9
STP HRGMv2_1031_3 HRGMv2_1031_3_55 61020 62186 - SIS | SIS
TF HRGMv2_1031_3 HRGMv2_1031_3_56 62301 63032 - GntR
TC HRGMv2_1031_3 HRGMv2_1031_3_57 63217 64299 - 4.A.6.1.4
TC HRGMv2_1031_3 HRGMv2_1031_3_58 64289 65089 - 4.A.6.1.4
TC HRGMv2_1031_3 HRGMv2_1031_3_59 65180 65662 - 4.A.6.1.4
pfam HRGMv2_1031_3 HRGMv2_1031_3_60 65699 65980 - YajC
TC HRGMv2_1031_3 HRGMv2_1031_3_61 65980 66423 - 4.A.6.1.16
Gene ID: HRGMv2_1031_3_54
Type: CAZyme
Location: 59732 - 60901 (-)
Gene ID: HRGMv2_1031_3_55
Type: STP
Location: 61020 - 62186 (-)
Gene ID: HRGMv2_1031_3_56
Type: TF
Location: 62301 - 63032 (-)
Gene ID: HRGMv2_1031_3_57
Type: TC
Location: 63217 - 64299 (-)
Gene ID: HRGMv2_1031_3_58
Type: TC
Location: 64289 - 65089 (-)
Gene ID: HRGMv2_1031_3_59
Type: TC
Location: 65180 - 65662 (-)
Gene ID: HRGMv2_1031_3_60
Type: pfam
Location: 65699 - 65980 (-)
Gene ID: HRGMv2_1031_3_61
Type: TC
Location: 65980 - 66423 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1031_3_60 vegan > omnivore 1.01806 0.01287

🧭 Explore Read Mapping of CGC

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