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Cluster: HRGMv2_1028_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1028_19 HRGMv2_1028_19_4 3869 5374 + GH77
CAZyme HRGMv2_1028_19 HRGMv2_1028_19_5 5504 7771 + GT35
TC HRGMv2_1028_19 HRGMv2_1028_19_6 8146 9342 - 3.A.1.1.22
TC HRGMv2_1028_19 HRGMv2_1028_19_7 9411 10250 - 3.A.1.1.45
TC HRGMv2_1028_19 HRGMv2_1028_19_8 10250 11104 - 3.A.1.1.45
TC HRGMv2_1028_19 HRGMv2_1028_19_9 11192 12508 - 3.A.1.1.45
TF HRGMv2_1028_19 HRGMv2_1028_19_10 12815 13534 - GntR
TC HRGMv2_1028_19 HRGMv2_1028_19_11 13795 16215 + 4.A.1.1.8
Gene ID: HRGMv2_1028_19_4
Type: CAZyme
Location: 3869 - 5374 (+)
Gene ID: HRGMv2_1028_19_5
Type: CAZyme
Location: 5504 - 7771 (+)
Gene ID: HRGMv2_1028_19_6
Type: TC
Location: 8146 - 9342 (-)
Gene ID: HRGMv2_1028_19_7
Type: TC
Location: 9411 - 10250 (-)
Gene ID: HRGMv2_1028_19_8
Type: TC
Location: 10250 - 11104 (-)
Gene ID: HRGMv2_1028_19_9
Type: TC
Location: 11192 - 12508 (-)
Gene ID: HRGMv2_1028_19_10
Type: TF
Location: 12815 - 13534 (-)
Gene ID: HRGMv2_1028_19_11
Type: TC
Location: 13795 - 16215 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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