Cluster: HRGMv2_1028_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1028
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1028_7 | HRGMv2_1028_7_22 | 25676 | 27235 | + | 2.A.2.5.1 |
| CAZyme | HRGMv2_1028_7 | HRGMv2_1028_7_23 | 27354 | 28949 | + | GH28 |
| CAZyme | HRGMv2_1028_7 | HRGMv2_1028_7_24 | 29084 | 31243 | + | CE19 | CE8 |
| pfam | HRGMv2_1028_7 | HRGMv2_1028_7_25 | 31315 | 31986 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_1028_7 | HRGMv2_1028_7_26 | 32094 | 33332 | + | GH105 |
Gene ID: HRGMv2_1028_7_22
Type: TC
Location: 25676 - 27235 (+)
Type: TC
Location: 25676 - 27235 (+)
Gene ID: HRGMv2_1028_7_23
Type: CAZyme
Location: 27354 - 28949 (+)
Type: CAZyme
Location: 27354 - 28949 (+)
Gene ID: HRGMv2_1028_7_24
Type: CAZyme
Location: 29084 - 31243 (+)
Type: CAZyme
Location: 29084 - 31243 (+)
Gene ID: HRGMv2_1028_7_25
Type: pfam
Location: 31315 - 31986 (+)
Type: pfam
Location: 31315 - 31986 (+)
Gene ID: HRGMv2_1028_7_26
Type: CAZyme
Location: 32094 - 33332 (+)
Type: CAZyme
Location: 32094 - 33332 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1028_7_25 | vegan > omnivore | 1.10841 | 0.02258 |
| HRGMv2_1028_7_26 | vegan > omnivore | 1.21752 | 0.02258 |