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Cluster: HRGMv2_1028_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1028_2 HRGMv2_1028_2_4 2769 4145 - GH13_20
TC HRGMv2_1028_2 HRGMv2_1028_2_5 4299 5495 - 2.A.1.2.18
pfam HRGMv2_1028_2 HRGMv2_1028_2_6 5599 6081 - tRNA_edit
TC HRGMv2_1028_2 HRGMv2_1028_2_7 6177 8534 - 9.A.8.1.6
peptidase HRGMv2_1028_2 HRGMv2_1028_2_8 8721 9623 - S09.UPW
TC HRGMv2_1028_2 HRGMv2_1028_2_9 9869 10432 + 4.A.1.2.6
pfam HRGMv2_1028_2 HRGMv2_1028_2_10 10614 12017 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1028_2 HRGMv2_1028_2_11 12269 13057 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1028_2 HRGMv2_1028_2_12 13217 14197 + 3.A.1.34.1
TC HRGMv2_1028_2 HRGMv2_1028_2_13 14402 15325 + 3.A.1.34.1
TC HRGMv2_1028_2 HRGMv2_1028_2_14 15318 16112 + 3.A.1.34.1
TC HRGMv2_1028_2 HRGMv2_1028_2_15 16403 17170 + 1.A.23.4.10
Gene ID: HRGMv2_1028_2_4
Type: CAZyme
Location: 2769 - 4145 (-)
Gene ID: HRGMv2_1028_2_5
Type: TC
Location: 4299 - 5495 (-)
Gene ID: HRGMv2_1028_2_6
Type: pfam
Location: 5599 - 6081 (-)
Gene ID: HRGMv2_1028_2_7
Type: TC
Location: 6177 - 8534 (-)
Gene ID: HRGMv2_1028_2_8
Type: peptidase
Location: 8721 - 9623 (-)
Gene ID: HRGMv2_1028_2_9
Type: TC
Location: 9869 - 10432 (+)
Gene ID: HRGMv2_1028_2_10
Type: pfam
Location: 10614 - 12017 (+)
Gene ID: HRGMv2_1028_2_11
Type:
Location: 12269 - 13057 (+)
Gene ID: HRGMv2_1028_2_12
Type: TC
Location: 13217 - 14197 (+)
Gene ID: HRGMv2_1028_2_13
Type: TC
Location: 14402 - 15325 (+)
Gene ID: HRGMv2_1028_2_14
Type: TC
Location: 15318 - 16112 (+)
Gene ID: HRGMv2_1028_2_15
Type: TC
Location: 16403 - 17170 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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