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Cluster: HRGMv2_1028_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1028_20 HRGMv2_1028_20_9 11913 12626 + 9.B.18.1.2
CAZyme HRGMv2_1028_20 HRGMv2_1028_20_10 12626 13402 + GT26
TC HRGMv2_1028_20 HRGMv2_1028_20_11 13403 14461 + 9.B.18.2.1
pfam HRGMv2_1028_20 HRGMv2_1028_20_12 14463 15680 + Epimerase | Polysacc_synt_C
pfam HRGMv2_1028_20 HRGMv2_1028_20_13 15685 16866 + Epimerase_2
CAZyme HRGMv2_1028_20 HRGMv2_1028_20_14 17386 18468 + GT4
CAZyme HRGMv2_1028_20 HRGMv2_1028_20_15 18664 19563 + GT4
NULL(UNKNOWN) HRGMv2_1028_20 HRGMv2_1028_20_16 19598 20842 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1028_20 HRGMv2_1028_20_17 20842 22272 + 2.A.66.2.23
Gene ID: HRGMv2_1028_20_9
Type: TC
Location: 11913 - 12626 (+)
Gene ID: HRGMv2_1028_20_10
Type: CAZyme
Location: 12626 - 13402 (+)
Gene ID: HRGMv2_1028_20_11
Type: TC
Location: 13403 - 14461 (+)
Gene ID: HRGMv2_1028_20_12
Type: pfam
Location: 14463 - 15680 (+)
Gene ID: HRGMv2_1028_20_13
Type: pfam
Location: 15685 - 16866 (+)
Gene ID: HRGMv2_1028_20_14
Type: CAZyme
Location: 17386 - 18468 (+)
Gene ID: HRGMv2_1028_20_15
Type: CAZyme
Location: 18664 - 19563 (+)
Gene ID: HRGMv2_1028_20_16
Type:
Location: 19598 - 20842 (+)
Gene ID: HRGMv2_1028_20_17
Type: TC
Location: 20842 - 22272 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1028_20_12 vegetarian > vegan 1.58769 0.00455

🧭 Explore Read Mapping of CGC

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