Cluster: HRGMv2_1026_CGC5
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1026
- CGC Family ID: CGCFAM_00182
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1026_9 | HRGMv2_1026_9_37 | 44903 | 46147 | - | GT4 |
| pfam | HRGMv2_1026_9 | HRGMv2_1026_9_38 | 46161 | 46925 | - | BcrAD_BadFG |
| pfam | HRGMv2_1026_9 | HRGMv2_1026_9_39 | 47080 | 48243 | - | HGD-D |
| TC | HRGMv2_1026_9 | HRGMv2_1026_9_40 | 48322 | 49107 | - | 3.A.1.5.36 |
| TC | HRGMv2_1026_9 | HRGMv2_1026_9_41 | 49094 | 50092 | - | 3.A.1.5.35 |
| TC | HRGMv2_1026_9 | HRGMv2_1026_9_42 | 50096 | 50923 | - | 3.A.1.5.39 |
| TC | HRGMv2_1026_9 | HRGMv2_1026_9_43 | 50923 | 51876 | - | 3.A.1.5.11 |
| TC | HRGMv2_1026_9 | HRGMv2_1026_9_44 | 51965 | 53578 | - | 3.A.1.5.11 |
| pfam | HRGMv2_1026_9 | HRGMv2_1026_9_45 | 53814 | 55097 | - | HGD-D |
| TC | HRGMv2_1026_9 | HRGMv2_1026_9_46 | 55538 | 56608 | - | 3.A.1.1.8 |
| TC | HRGMv2_1026_9 | HRGMv2_1026_9_47 | 56612 | 58054 | - | 3.A.1.8.1 |
Gene ID: HRGMv2_1026_9_37
Type: CAZyme
Location: 44903 - 46147 (-)
Type: CAZyme
Location: 44903 - 46147 (-)
Gene ID: HRGMv2_1026_9_38
Type: pfam
Location: 46161 - 46925 (-)
Type: pfam
Location: 46161 - 46925 (-)
Gene ID: HRGMv2_1026_9_39
Type: pfam
Location: 47080 - 48243 (-)
Type: pfam
Location: 47080 - 48243 (-)
Gene ID: HRGMv2_1026_9_40
Type: TC
Location: 48322 - 49107 (-)
Type: TC
Location: 48322 - 49107 (-)
Gene ID: HRGMv2_1026_9_41
Type: TC
Location: 49094 - 50092 (-)
Type: TC
Location: 49094 - 50092 (-)
Gene ID: HRGMv2_1026_9_42
Type: TC
Location: 50096 - 50923 (-)
Type: TC
Location: 50096 - 50923 (-)
Gene ID: HRGMv2_1026_9_43
Type: TC
Location: 50923 - 51876 (-)
Type: TC
Location: 50923 - 51876 (-)
Gene ID: HRGMv2_1026_9_44
Type: TC
Location: 51965 - 53578 (-)
Type: TC
Location: 51965 - 53578 (-)
Gene ID: HRGMv2_1026_9_45
Type: pfam
Location: 53814 - 55097 (-)
Type: pfam
Location: 53814 - 55097 (-)
Gene ID: HRGMv2_1026_9_46
Type: TC
Location: 55538 - 56608 (-)
Type: TC
Location: 55538 - 56608 (-)
Gene ID: HRGMv2_1026_9_47
Type: TC
Location: 56612 - 58054 (-)
Type: TC
Location: 56612 - 58054 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1026_9_40 | vegan > omnivore | 2.73107 | 0.00701 |
| HRGMv2_1026_9_42 | vegan > omnivore | 2.63828 | 0.00701 |
| HRGMv2_1026_9_43 | vegan > omnivore | 2.43375 | 0.00701 |
| HRGMv2_1026_9_44 | vegan > omnivore | 2.97698 | 0.00701 |