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Cluster: HRGMv2_1026_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1026_47 HRGMv2_1026_47_6 3551 4720 - CE9
STP HRGMv2_1026_47 HRGMv2_1026_47_7 4839 6005 - SIS | SIS
TF HRGMv2_1026_47 HRGMv2_1026_47_8 6120 6851 - GntR
TC HRGMv2_1026_47 HRGMv2_1026_47_9 7037 8119 - 4.A.6.1.4
TC HRGMv2_1026_47 HRGMv2_1026_47_10 8109 8909 - 4.A.6.1.4
TC HRGMv2_1026_47 HRGMv2_1026_47_11 9000 9482 - 4.A.6.1.4
pfam HRGMv2_1026_47 HRGMv2_1026_47_12 9519 9800 - YajC
TC HRGMv2_1026_47 HRGMv2_1026_47_13 9800 10243 - 4.A.6.1.16
Gene ID: HRGMv2_1026_47_6
Type: CAZyme
Location: 3551 - 4720 (-)
Gene ID: HRGMv2_1026_47_7
Type: STP
Location: 4839 - 6005 (-)
Gene ID: HRGMv2_1026_47_8
Type: TF
Location: 6120 - 6851 (-)
Gene ID: HRGMv2_1026_47_9
Type: TC
Location: 7037 - 8119 (-)
Gene ID: HRGMv2_1026_47_10
Type: TC
Location: 8109 - 8909 (-)
Gene ID: HRGMv2_1026_47_11
Type: TC
Location: 9000 - 9482 (-)
Gene ID: HRGMv2_1026_47_12
Type: pfam
Location: 9519 - 9800 (-)
Gene ID: HRGMv2_1026_47_13
Type: TC
Location: 9800 - 10243 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1026_47_12 vegan > omnivore 1.05885 0.00701

🧭 Explore Read Mapping of CGC

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