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Cluster: HRGMv2_1026_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1026_36 HRGMv2_1026_36_10 10637 12013 - GH13_20
TC HRGMv2_1026_36 HRGMv2_1026_36_11 12167 13363 - 2.A.1.2.18
TC HRGMv2_1026_36 HRGMv2_1026_36_12 13485 15845 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1026_36 HRGMv2_1026_36_13 15967 16287 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1026_36 HRGMv2_1026_36_14 16335 17234 - S09.UPW
TC HRGMv2_1026_36 HRGMv2_1026_36_15 17479 18042 + 4.A.1.2.6
pfam HRGMv2_1026_36 HRGMv2_1026_36_16 18224 19627 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1026_36 HRGMv2_1026_36_17 19876 20664 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1026_36 HRGMv2_1026_36_18 20824 21804 + 3.A.1.34.1
TC HRGMv2_1026_36 HRGMv2_1026_36_19 22009 22932 + 3.A.1.34.1
TC HRGMv2_1026_36 HRGMv2_1026_36_20 22925 23719 + 3.A.1.34.1
pfam HRGMv2_1026_36 HRGMv2_1026_36_21 23793 25823 + Metallophos | 5_nucleotid_C
TC HRGMv2_1026_36 HRGMv2_1026_36_22 25953 26720 + 1.A.23.4.10
Gene ID: HRGMv2_1026_36_10
Type: CAZyme
Location: 10637 - 12013 (-)
Gene ID: HRGMv2_1026_36_11
Type: TC
Location: 12167 - 13363 (-)
Gene ID: HRGMv2_1026_36_12
Type: TC
Location: 13485 - 15845 (-)
Gene ID: HRGMv2_1026_36_13
Type:
Location: 15967 - 16287 (-)
Gene ID: HRGMv2_1026_36_14
Type: peptidase
Location: 16335 - 17234 (-)
Gene ID: HRGMv2_1026_36_15
Type: TC
Location: 17479 - 18042 (+)
Gene ID: HRGMv2_1026_36_16
Type: pfam
Location: 18224 - 19627 (+)
Gene ID: HRGMv2_1026_36_17
Type:
Location: 19876 - 20664 (+)
Gene ID: HRGMv2_1026_36_18
Type: TC
Location: 20824 - 21804 (+)
Gene ID: HRGMv2_1026_36_19
Type: TC
Location: 22009 - 22932 (+)
Gene ID: HRGMv2_1026_36_20
Type: TC
Location: 22925 - 23719 (+)
Gene ID: HRGMv2_1026_36_21
Type: pfam
Location: 23793 - 25823 (+)
Gene ID: HRGMv2_1026_36_22
Type: TC
Location: 25953 - 26720 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1026_36_21 vegan > omnivore 1.80058 0.00701
HRGMv2_1026_36_21 vegetarian > omnivore 1.41222 0.01560

🧭 Explore Read Mapping of CGC

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