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Cluster: HRGMv2_1026_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1026_35 HRGMv2_1026_35_3 2732 5185 - 4.A.1.1.8
TF HRGMv2_1026_35 HRGMv2_1026_35_4 5411 6130 + GntR
TC HRGMv2_1026_35 HRGMv2_1026_35_5 6437 7753 + 3.A.1.1.45
TC HRGMv2_1026_35 HRGMv2_1026_35_6 7841 8695 + 3.A.1.1.45
TC HRGMv2_1026_35 HRGMv2_1026_35_7 8695 9534 + 3.A.1.1.45
TC HRGMv2_1026_35 HRGMv2_1026_35_8 9603 10802 + 3.A.1.1.22
CAZyme HRGMv2_1026_35 HRGMv2_1026_35_9 11336 13603 - GT35
CAZyme HRGMv2_1026_35 HRGMv2_1026_35_10 13733 15238 - GH77
Gene ID: HRGMv2_1026_35_3
Type: TC
Location: 2732 - 5185 (-)
Gene ID: HRGMv2_1026_35_4
Type: TF
Location: 5411 - 6130 (+)
Gene ID: HRGMv2_1026_35_5
Type: TC
Location: 6437 - 7753 (+)
Gene ID: HRGMv2_1026_35_6
Type: TC
Location: 7841 - 8695 (+)
Gene ID: HRGMv2_1026_35_7
Type: TC
Location: 8695 - 9534 (+)
Gene ID: HRGMv2_1026_35_8
Type: TC
Location: 9603 - 10802 (+)
Gene ID: HRGMv2_1026_35_9
Type: CAZyme
Location: 11336 - 13603 (-)
Gene ID: HRGMv2_1026_35_10
Type: CAZyme
Location: 13733 - 15238 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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