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Cluster: HRGMv2_1026_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1026_25 HRGMv2_1026_25_21 23584 23922 - 4.A.3.1.2
TF HRGMv2_1026_25 HRGMv2_1026_25_22 24137 25141 - LacI
TC HRGMv2_1026_25 HRGMv2_1026_25_23 25498 27267 + 4.A.3.1.1
CAZyme HRGMv2_1026_25 HRGMv2_1026_25_24 27334 28773 + GH1
TF HRGMv2_1026_25 HRGMv2_1026_25_25 29232 30242 - LacI
TC HRGMv2_1026_25 HRGMv2_1026_25_26 30519 32297 + 4.A.3.1.1
CAZyme HRGMv2_1026_25 HRGMv2_1026_25_27 32374 33795 + GH1
TF HRGMv2_1026_25 HRGMv2_1026_25_28 34136 34900 - HTH_DeoR
sulfatase HRGMv2_1026_25 HRGMv2_1026_25_29 35106 36158 + S1_4
TC HRGMv2_1026_25 HRGMv2_1026_25_30 36485 36967 - 4.A.6.1.5
Gene ID: HRGMv2_1026_25_21
Type: TC
Location: 23584 - 23922 (-)
Gene ID: HRGMv2_1026_25_22
Type: TF
Location: 24137 - 25141 (-)
Gene ID: HRGMv2_1026_25_23
Type: TC
Location: 25498 - 27267 (+)
Gene ID: HRGMv2_1026_25_24
Type: CAZyme
Location: 27334 - 28773 (+)
Gene ID: HRGMv2_1026_25_25
Type: TF
Location: 29232 - 30242 (-)
Gene ID: HRGMv2_1026_25_26
Type: TC
Location: 30519 - 32297 (+)
Gene ID: HRGMv2_1026_25_27
Type: CAZyme
Location: 32374 - 33795 (+)
Gene ID: HRGMv2_1026_25_28
Type: TF
Location: 34136 - 34900 (-)
Gene ID: HRGMv2_1026_25_29
Type: sulfatase
Location: 35106 - 36158 (+)
Gene ID: HRGMv2_1026_25_30
Type: TC
Location: 36485 - 36967 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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