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Cluster: HRGMv2_1026_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1026_22 HRGMv2_1026_22_6 6792 7622 - 3.A.1.132.3
pfam HRGMv2_1026_22 HRGMv2_1026_22_7 7881 10760 + UvrA_DNA-bind | UvrA_inter
pfam HRGMv2_1026_22 HRGMv2_1026_22_8 10895 11395 + tRNA_edit
TC HRGMv2_1026_22 HRGMv2_1026_22_9 11399 13708 + 2.A.66.4.4
pfam HRGMv2_1026_22 HRGMv2_1026_22_10 13715 15655 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1026_22 HRGMv2_1026_22_11 16021 17634 + 3.A.1.5.27
TC HRGMv2_1026_22 HRGMv2_1026_22_12 17790 18746 + 3.A.1.5.38
TC HRGMv2_1026_22 HRGMv2_1026_22_13 18750 20765 + 3.A.1.5.25
TC HRGMv2_1026_22 HRGMv2_1026_22_14 20766 21593 + 3.A.1.5.27
CAZyme HRGMv2_1026_22 HRGMv2_1026_22_15 21725 22651 + CE7
Gene ID: HRGMv2_1026_22_6
Type: TC
Location: 6792 - 7622 (-)
Gene ID: HRGMv2_1026_22_7
Type: pfam
Location: 7881 - 10760 (+)
Gene ID: HRGMv2_1026_22_8
Type: pfam
Location: 10895 - 11395 (+)
Gene ID: HRGMv2_1026_22_9
Type: TC
Location: 11399 - 13708 (+)
Gene ID: HRGMv2_1026_22_10
Type: pfam
Location: 13715 - 15655 (+)
Gene ID: HRGMv2_1026_22_11
Type: TC
Location: 16021 - 17634 (+)
Gene ID: HRGMv2_1026_22_12
Type: TC
Location: 17790 - 18746 (+)
Gene ID: HRGMv2_1026_22_13
Type: TC
Location: 18750 - 20765 (+)
Gene ID: HRGMv2_1026_22_14
Type: TC
Location: 20766 - 21593 (+)
Gene ID: HRGMv2_1026_22_15
Type: CAZyme
Location: 21725 - 22651 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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