Cluster: HRGMv2_1025_CGC5
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1025
- CGC Family ID: CGCFAM_00413
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1025_3 | HRGMv2_1025_3_13 | 14794 | 16107 | - | GH140 |
| TC | HRGMv2_1025_3 | HRGMv2_1025_3_14 | 16318 | 17745 | - | 4.A.1.2.11 |
| peptidase | HRGMv2_1025_3 | HRGMv2_1025_3_15 | 18236 | 19573 | + | S09.UPW |
| pfam | HRGMv2_1025_3 | HRGMv2_1025_3_16 | 19837 | 21348 | + | Sde182_NH-like |
| TC | HRGMv2_1025_3 | HRGMv2_1025_3_17 | 21532 | 22443 | - | 2.A.69.4.3 |
| NULL(UNKNOWN) | HRGMv2_1025_3 | HRGMv2_1025_3_18 | 22452 | 23669 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1025_3 | HRGMv2_1025_3_19 | 23746 | 25170 | - | 4.A.1.2.3 |
| pfam | HRGMv2_1025_3 | HRGMv2_1025_3_20 | 25328 | 26170 | - | PRD | PRD | CAT_RBD |
| NULL(UNKNOWN) | HRGMv2_1025_3 | HRGMv2_1025_3_21 | 26817 | 27923 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1025_3 | HRGMv2_1025_3_22 | 28223 | 29653 | - | GH1 |
| pfam | HRGMv2_1025_3 | HRGMv2_1025_3_23 | 30146 | 30790 | - | DUF4867 |
| peptidase | HRGMv2_1025_3 | HRGMv2_1025_3_24 | 30918 | 31898 | - | S09.UPC |
| TC | HRGMv2_1025_3 | HRGMv2_1025_3_25 | 32003 | 33373 | - | 4.A.1.2.6 |
Gene ID: HRGMv2_1025_3_13
Type: CAZyme
Location: 14794 - 16107 (-)
Type: CAZyme
Location: 14794 - 16107 (-)
Gene ID: HRGMv2_1025_3_14
Type: TC
Location: 16318 - 17745 (-)
Type: TC
Location: 16318 - 17745 (-)
Gene ID: HRGMv2_1025_3_15
Type: peptidase
Location: 18236 - 19573 (+)
Type: peptidase
Location: 18236 - 19573 (+)
Gene ID: HRGMv2_1025_3_16
Type: pfam
Location: 19837 - 21348 (+)
Type: pfam
Location: 19837 - 21348 (+)
Gene ID: HRGMv2_1025_3_17
Type: TC
Location: 21532 - 22443 (-)
Type: TC
Location: 21532 - 22443 (-)
Gene ID: HRGMv2_1025_3_18
Type:
Location: 22452 - 23669 (-)
Type:
Location: 22452 - 23669 (-)
Gene ID: HRGMv2_1025_3_19
Type: TC
Location: 23746 - 25170 (-)
Type: TC
Location: 23746 - 25170 (-)
Gene ID: HRGMv2_1025_3_20
Type: pfam
Location: 25328 - 26170 (-)
Type: pfam
Location: 25328 - 26170 (-)
Gene ID: HRGMv2_1025_3_21
Type:
Location: 26817 - 27923 (-)
Type:
Location: 26817 - 27923 (-)
Gene ID: HRGMv2_1025_3_22
Type: CAZyme
Location: 28223 - 29653 (-)
Type: CAZyme
Location: 28223 - 29653 (-)
Gene ID: HRGMv2_1025_3_23
Type: pfam
Location: 30146 - 30790 (-)
Type: pfam
Location: 30146 - 30790 (-)
Gene ID: HRGMv2_1025_3_24
Type: peptidase
Location: 30918 - 31898 (-)
Type: peptidase
Location: 30918 - 31898 (-)
Gene ID: HRGMv2_1025_3_25
Type: TC
Location: 32003 - 33373 (-)
Type: TC
Location: 32003 - 33373 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.