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Cluster: HRGMv2_1025_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1025_2 HRGMv2_1025_2_71 70265 71686 - GH1
TC HRGMv2_1025_2 HRGMv2_1025_2_72 71762 73519 - 4.A.3.1.1
TF HRGMv2_1025_2 HRGMv2_1025_2_73 73795 74805 + LacI
TC HRGMv2_1025_2 HRGMv2_1025_2_74 75139 76899 - 4.A.3.1.1
CAZyme HRGMv2_1025_2 HRGMv2_1025_2_75 77076 78518 - GH1
TF HRGMv2_1025_2 HRGMv2_1025_2_76 78860 79897 + LacI
CAZyme HRGMv2_1025_2 HRGMv2_1025_2_77 80165 81604 - GH1
TC HRGMv2_1025_2 HRGMv2_1025_2_78 81801 83573 - 4.A.3.1.1
TF HRGMv2_1025_2 HRGMv2_1025_2_79 83930 84934 + LacI
TC HRGMv2_1025_2 HRGMv2_1025_2_80 85149 85487 + 4.A.3.1.2
Gene ID: HRGMv2_1025_2_71
Type: CAZyme
Location: 70265 - 71686 (-)
Gene ID: HRGMv2_1025_2_72
Type: TC
Location: 71762 - 73519 (-)
Gene ID: HRGMv2_1025_2_73
Type: TF
Location: 73795 - 74805 (+)
Gene ID: HRGMv2_1025_2_74
Type: TC
Location: 75139 - 76899 (-)
Gene ID: HRGMv2_1025_2_75
Type: CAZyme
Location: 77076 - 78518 (-)
Gene ID: HRGMv2_1025_2_76
Type: TF
Location: 78860 - 79897 (+)
Gene ID: HRGMv2_1025_2_77
Type: CAZyme
Location: 80165 - 81604 (-)
Gene ID: HRGMv2_1025_2_78
Type: TC
Location: 81801 - 83573 (-)
Gene ID: HRGMv2_1025_2_79
Type: TF
Location: 83930 - 84934 (+)
Gene ID: HRGMv2_1025_2_80
Type: TC
Location: 85149 - 85487 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1025_2_76 vegetarian > omnivore 1.02039 0.03761

🧭 Explore Read Mapping of CGC

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