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Cluster: HRGMv2_1025_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1025_2 HRGMv2_1025_2_52 54807 55250 + 4.A.6.1.16
pfam HRGMv2_1025_2 HRGMv2_1025_2_53 55250 55531 + YajC
TC HRGMv2_1025_2 HRGMv2_1025_2_54 55568 56050 + 4.A.6.1.4
TC HRGMv2_1025_2 HRGMv2_1025_2_55 56140 56940 + 4.A.6.1.4
TC HRGMv2_1025_2 HRGMv2_1025_2_56 56930 58012 + 4.A.6.1.4
TF HRGMv2_1025_2 HRGMv2_1025_2_57 58197 58928 + GntR
STP HRGMv2_1025_2 HRGMv2_1025_2_58 59043 60209 + SIS | SIS
CAZyme HRGMv2_1025_2 HRGMv2_1025_2_59 60328 61497 + CE9
Gene ID: HRGMv2_1025_2_52
Type: TC
Location: 54807 - 55250 (+)
Gene ID: HRGMv2_1025_2_53
Type: pfam
Location: 55250 - 55531 (+)
Gene ID: HRGMv2_1025_2_54
Type: TC
Location: 55568 - 56050 (+)
Gene ID: HRGMv2_1025_2_55
Type: TC
Location: 56140 - 56940 (+)
Gene ID: HRGMv2_1025_2_56
Type: TC
Location: 56930 - 58012 (+)
Gene ID: HRGMv2_1025_2_57
Type: TF
Location: 58197 - 58928 (+)
Gene ID: HRGMv2_1025_2_58
Type: STP
Location: 59043 - 60209 (+)
Gene ID: HRGMv2_1025_2_59
Type: CAZyme
Location: 60328 - 61497 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1025_2_53 vegan > omnivore 1.10900 0.00701

🧭 Explore Read Mapping of CGC

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