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Cluster: HRGMv2_1025_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1025_11 HRGMv2_1025_11_16 17809 19191 - GH4
TC HRGMv2_1025_11 HRGMv2_1025_11_17 19195 20811 - 4.A.1.1.3
pfam HRGMv2_1025_11 HRGMv2_1025_11_18 20912 21778 - PRD | PRD | CAT_RBD
TC HRGMv2_1025_11 HRGMv2_1025_11_19 21785 22030 - 4.A.1.2.11
pfam HRGMv2_1025_11 HRGMv2_1025_11_20 22002 22184 - CAT_RBD
TC HRGMv2_1025_11 HRGMv2_1025_11_21 22191 22703 - 4.A.1.2.11
STP HRGMv2_1025_11 HRGMv2_1025_11_22 23047 23808 - Fer4 | Fer4
TC HRGMv2_1025_11 HRGMv2_1025_11_23 24429 26687 - 1.I.1.1.3
STP HRGMv2_1025_11 HRGMv2_1025_11_24 27368 28249 + FHA
STP HRGMv2_1025_11 HRGMv2_1025_11_25 28421 30505 + Pkinase
TC HRGMv2_1025_11 HRGMv2_1025_11_26 30920 33259 + 3.A.3.5.15
Gene ID: HRGMv2_1025_11_16
Type: CAZyme
Location: 17809 - 19191 (-)
Gene ID: HRGMv2_1025_11_17
Type: TC
Location: 19195 - 20811 (-)
Gene ID: HRGMv2_1025_11_18
Type: pfam
Location: 20912 - 21778 (-)
Gene ID: HRGMv2_1025_11_19
Type: TC
Location: 21785 - 22030 (-)
Gene ID: HRGMv2_1025_11_20
Type: pfam
Location: 22002 - 22184 (-)
Gene ID: HRGMv2_1025_11_21
Type: TC
Location: 22191 - 22703 (-)
Gene ID: HRGMv2_1025_11_22
Type: STP
Location: 23047 - 23808 (-)
Gene ID: HRGMv2_1025_11_23
Type: TC
Location: 24429 - 26687 (-)
Gene ID: HRGMv2_1025_11_24
Type: STP
Location: 27368 - 28249 (+)
Gene ID: HRGMv2_1025_11_25
Type: STP
Location: 28421 - 30505 (+)
Gene ID: HRGMv2_1025_11_26
Type: TC
Location: 30920 - 33259 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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