Cluster: HRGMv2_1025_CGC11
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1025
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1025_9 | HRGMv2_1025_9_63 | 66163 | 67539 | - | GH13_20 |
| TC | HRGMv2_1025_9 | HRGMv2_1025_9_64 | 67694 | 68890 | - | 2.A.1.2.18 |
| TC | HRGMv2_1025_9 | HRGMv2_1025_9_65 | 69012 | 71372 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | HRGMv2_1025_9 | HRGMv2_1025_9_66 | 71494 | 71814 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | HRGMv2_1025_9 | HRGMv2_1025_9_67 | 71862 | 72761 | - | S09.UPW |
| TC | HRGMv2_1025_9 | HRGMv2_1025_9_68 | 73006 | 73569 | + | 4.A.1.2.6 |
| pfam | HRGMv2_1025_9 | HRGMv2_1025_9_69 | 73751 | 75154 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | HRGMv2_1025_9 | HRGMv2_1025_9_70 | 75404 | 76189 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1025_9 | HRGMv2_1025_9_71 | 76350 | 77330 | + | 3.A.1.34.1 |
| TC | HRGMv2_1025_9 | HRGMv2_1025_9_72 | 77535 | 78458 | + | 3.A.1.34.1 |
| TC | HRGMv2_1025_9 | HRGMv2_1025_9_73 | 78451 | 79245 | + | 3.A.1.34.1 |
| TC | HRGMv2_1025_9 | HRGMv2_1025_9_74 | 79580 | 80347 | + | 1.A.23.4.2 |
Gene ID: HRGMv2_1025_9_63
Type: CAZyme
Location: 66163 - 67539 (-)
Type: CAZyme
Location: 66163 - 67539 (-)
Gene ID: HRGMv2_1025_9_64
Type: TC
Location: 67694 - 68890 (-)
Type: TC
Location: 67694 - 68890 (-)
Gene ID: HRGMv2_1025_9_65
Type: TC
Location: 69012 - 71372 (-)
Type: TC
Location: 69012 - 71372 (-)
Gene ID: HRGMv2_1025_9_66
Type:
Location: 71494 - 71814 (-)
Type:
Location: 71494 - 71814 (-)
Gene ID: HRGMv2_1025_9_67
Type: peptidase
Location: 71862 - 72761 (-)
Type: peptidase
Location: 71862 - 72761 (-)
Gene ID: HRGMv2_1025_9_68
Type: TC
Location: 73006 - 73569 (+)
Type: TC
Location: 73006 - 73569 (+)
Gene ID: HRGMv2_1025_9_69
Type: pfam
Location: 73751 - 75154 (+)
Type: pfam
Location: 73751 - 75154 (+)
Gene ID: HRGMv2_1025_9_70
Type:
Location: 75404 - 76189 (+)
Type:
Location: 75404 - 76189 (+)
Gene ID: HRGMv2_1025_9_71
Type: TC
Location: 76350 - 77330 (+)
Type: TC
Location: 76350 - 77330 (+)
Gene ID: HRGMv2_1025_9_72
Type: TC
Location: 77535 - 78458 (+)
Type: TC
Location: 77535 - 78458 (+)
Gene ID: HRGMv2_1025_9_73
Type: TC
Location: 78451 - 79245 (+)
Type: TC
Location: 78451 - 79245 (+)
Gene ID: HRGMv2_1025_9_74
Type: TC
Location: 79580 - 80347 (+)
Type: TC
Location: 79580 - 80347 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.