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Cluster: HRGMv2_1024_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1024_8 HRGMv2_1024_8_9 5890 7059 - CE9
STP HRGMv2_1024_8 HRGMv2_1024_8_10 7178 8344 - SIS | SIS
TF HRGMv2_1024_8 HRGMv2_1024_8_11 8459 9190 - GntR
TC HRGMv2_1024_8 HRGMv2_1024_8_12 9375 10457 - 4.A.6.1.4
TC HRGMv2_1024_8 HRGMv2_1024_8_13 10447 11247 - 4.A.6.1.4
TC HRGMv2_1024_8 HRGMv2_1024_8_14 11338 11820 - 4.A.6.1.4
pfam HRGMv2_1024_8 HRGMv2_1024_8_15 11857 12138 - YajC
TC HRGMv2_1024_8 HRGMv2_1024_8_16 12138 12581 - 4.A.6.1.16
Gene ID: HRGMv2_1024_8_9
Type: CAZyme
Location: 5890 - 7059 (-)
Gene ID: HRGMv2_1024_8_10
Type: STP
Location: 7178 - 8344 (-)
Gene ID: HRGMv2_1024_8_11
Type: TF
Location: 8459 - 9190 (-)
Gene ID: HRGMv2_1024_8_12
Type: TC
Location: 9375 - 10457 (-)
Gene ID: HRGMv2_1024_8_13
Type: TC
Location: 10447 - 11247 (-)
Gene ID: HRGMv2_1024_8_14
Type: TC
Location: 11338 - 11820 (-)
Gene ID: HRGMv2_1024_8_15
Type: pfam
Location: 11857 - 12138 (-)
Gene ID: HRGMv2_1024_8_16
Type: TC
Location: 12138 - 12581 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1024_8_15 vegan > omnivore 1.12231 0.00455

🧭 Explore Read Mapping of CGC

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