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Cluster: HRGMv2_1024_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1024_25 HRGMv2_1024_25_11 15256 17706 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_1024_25 HRGMv2_1024_25_12 17728 17847 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1024_25 HRGMv2_1024_25_13 17931 18650 + GntR
TC HRGMv2_1024_25 HRGMv2_1024_25_14 18957 20273 + 3.A.1.1.45
TC HRGMv2_1024_25 HRGMv2_1024_25_15 20361 21215 + 3.A.1.1.45
TC HRGMv2_1024_25 HRGMv2_1024_25_16 21215 22054 + 3.A.1.1.45
TC HRGMv2_1024_25 HRGMv2_1024_25_17 22123 23322 + 3.A.1.1.22
CAZyme HRGMv2_1024_25 HRGMv2_1024_25_18 23779 26046 - GT35
CAZyme HRGMv2_1024_25 HRGMv2_1024_25_19 26175 27680 - GH77
Gene ID: HRGMv2_1024_25_11
Type: TC
Location: 15256 - 17706 (-)
Gene ID: HRGMv2_1024_25_12
Type:
Location: 17728 - 17847 (+)
Gene ID: HRGMv2_1024_25_13
Type: TF
Location: 17931 - 18650 (+)
Gene ID: HRGMv2_1024_25_14
Type: TC
Location: 18957 - 20273 (+)
Gene ID: HRGMv2_1024_25_15
Type: TC
Location: 20361 - 21215 (+)
Gene ID: HRGMv2_1024_25_16
Type: TC
Location: 21215 - 22054 (+)
Gene ID: HRGMv2_1024_25_17
Type: TC
Location: 22123 - 23322 (+)
Gene ID: HRGMv2_1024_25_18
Type: CAZyme
Location: 23779 - 26046 (-)
Gene ID: HRGMv2_1024_25_19
Type: CAZyme
Location: 26175 - 27680 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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