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Cluster: HRGMv2_1024_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1024_18 HRGMv2_1024_18_41 47680 48018 - 4.A.3.1.2
TF HRGMv2_1024_18 HRGMv2_1024_18_42 48233 49237 - LacI
TC HRGMv2_1024_18 HRGMv2_1024_18_43 49594 51369 + 4.A.3.1.1
CAZyme HRGMv2_1024_18 HRGMv2_1024_18_44 51436 52875 + GH1
TF HRGMv2_1024_18 HRGMv2_1024_18_45 53326 54327 - LacI
TC HRGMv2_1024_18 HRGMv2_1024_18_46 54612 56390 + 4.A.3.1.1
CAZyme HRGMv2_1024_18 HRGMv2_1024_18_47 56467 57888 + GH1
Gene ID: HRGMv2_1024_18_41
Type: TC
Location: 47680 - 48018 (-)
Gene ID: HRGMv2_1024_18_42
Type: TF
Location: 48233 - 49237 (-)
Gene ID: HRGMv2_1024_18_43
Type: TC
Location: 49594 - 51369 (+)
Gene ID: HRGMv2_1024_18_44
Type: CAZyme
Location: 51436 - 52875 (+)
Gene ID: HRGMv2_1024_18_45
Type: TF
Location: 53326 - 54327 (-)
Gene ID: HRGMv2_1024_18_46
Type: TC
Location: 54612 - 56390 (+)
Gene ID: HRGMv2_1024_18_47
Type: CAZyme
Location: 56467 - 57888 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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