Cluster: HRGMv2_1024_CGC1
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1024
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1024_2 | HRGMv2_1024_2_6 | 3819 | 4526 | + | 1.C.82.1.1 |
| pfam | HRGMv2_1024_2 | HRGMv2_1024_2_7 | 4652 | 5362 | - | Metallophos | Metallophos_2 |
| pfam | HRGMv2_1024_2 | HRGMv2_1024_2_8 | 5359 | 7275 | - | Bmp |
| TC | HRGMv2_1024_2 | HRGMv2_1024_2_9 | 7369 | 8136 | - | 1.A.23.4.2 |
| pfam | HRGMv2_1024_2 | HRGMv2_1024_2_10 | 8265 | 10292 | - | Metallophos | 5_nucleotid_C |
| TC | HRGMv2_1024_2 | HRGMv2_1024_2_11 | 10450 | 11244 | - | 3.A.1.34.1 |
| TC | HRGMv2_1024_2 | HRGMv2_1024_2_12 | 11237 | 12160 | - | 3.A.1.34.1 |
| TC | HRGMv2_1024_2 | HRGMv2_1024_2_13 | 12365 | 13345 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | HRGMv2_1024_2 | HRGMv2_1024_2_14 | 13506 | 14291 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1024_2 | HRGMv2_1024_2_15 | 14541 | 15944 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | HRGMv2_1024_2 | HRGMv2_1024_2_16 | 16126 | 16689 | - | 4.A.1.2.6 |
| peptidase | HRGMv2_1024_2 | HRGMv2_1024_2_17 | 16934 | 17833 | + | S09.UPW |
| NULL(UNKNOWN) | HRGMv2_1024_2 | HRGMv2_1024_2_18 | 17881 | 18201 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1024_2 | HRGMv2_1024_2_19 | 18323 | 20683 | + | 9.A.8.1.6 |
| TC | HRGMv2_1024_2 | HRGMv2_1024_2_20 | 20805 | 22001 | + | 2.A.1.2.18 |
| CAZyme | HRGMv2_1024_2 | HRGMv2_1024_2_21 | 22155 | 23531 | + | GH13_20 |
Gene ID: HRGMv2_1024_2_6
Type: TC
Location: 3819 - 4526 (+)
Type: TC
Location: 3819 - 4526 (+)
Gene ID: HRGMv2_1024_2_7
Type: pfam
Location: 4652 - 5362 (-)
Type: pfam
Location: 4652 - 5362 (-)
Gene ID: HRGMv2_1024_2_8
Type: pfam
Location: 5359 - 7275 (-)
Type: pfam
Location: 5359 - 7275 (-)
Gene ID: HRGMv2_1024_2_9
Type: TC
Location: 7369 - 8136 (-)
Type: TC
Location: 7369 - 8136 (-)
Gene ID: HRGMv2_1024_2_10
Type: pfam
Location: 8265 - 10292 (-)
Type: pfam
Location: 8265 - 10292 (-)
Gene ID: HRGMv2_1024_2_11
Type: TC
Location: 10450 - 11244 (-)
Type: TC
Location: 10450 - 11244 (-)
Gene ID: HRGMv2_1024_2_12
Type: TC
Location: 11237 - 12160 (-)
Type: TC
Location: 11237 - 12160 (-)
Gene ID: HRGMv2_1024_2_13
Type: TC
Location: 12365 - 13345 (-)
Type: TC
Location: 12365 - 13345 (-)
Gene ID: HRGMv2_1024_2_14
Type:
Location: 13506 - 14291 (-)
Type:
Location: 13506 - 14291 (-)
Gene ID: HRGMv2_1024_2_15
Type: pfam
Location: 14541 - 15944 (-)
Type: pfam
Location: 14541 - 15944 (-)
Gene ID: HRGMv2_1024_2_16
Type: TC
Location: 16126 - 16689 (-)
Type: TC
Location: 16126 - 16689 (-)
Gene ID: HRGMv2_1024_2_17
Type: peptidase
Location: 16934 - 17833 (+)
Type: peptidase
Location: 16934 - 17833 (+)
Gene ID: HRGMv2_1024_2_18
Type:
Location: 17881 - 18201 (+)
Type:
Location: 17881 - 18201 (+)
Gene ID: HRGMv2_1024_2_19
Type: TC
Location: 18323 - 20683 (+)
Type: TC
Location: 18323 - 20683 (+)
Gene ID: HRGMv2_1024_2_20
Type: TC
Location: 20805 - 22001 (+)
Type: TC
Location: 20805 - 22001 (+)
Gene ID: HRGMv2_1024_2_21
Type: CAZyme
Location: 22155 - 23531 (+)
Type: CAZyme
Location: 22155 - 23531 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1024_2_10 | vegan > omnivore | 1.77149 | 0.00455 |
| HRGMv2_1024_2_10 | vegetarian > omnivore | 1.32919 | 0.01882 |