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Cluster: HRGMv2_1023_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1023_56 HRGMv2_1023_56_4 1444 3783 - 3.A.3.5.15
STP HRGMv2_1023_56 HRGMv2_1023_56_5 4277 6361 - Pkinase
STP HRGMv2_1023_56 HRGMv2_1023_56_6 6531 7493 - FHA
TC HRGMv2_1023_56 HRGMv2_1023_56_7 8093 10279 + 1.I.1.1.3
TC HRGMv2_1023_56 HRGMv2_1023_56_8 10726 11238 + 4.A.1.2.5
pfam HRGMv2_1023_56 HRGMv2_1023_56_9 11245 12111 + PRD | PRD | CAT_RBD
TC HRGMv2_1023_56 HRGMv2_1023_56_10 12212 13828 + 4.A.1.1.3
CAZyme HRGMv2_1023_56 HRGMv2_1023_56_11 13832 15214 + GH4
Gene ID: HRGMv2_1023_56_4
Type: TC
Location: 1444 - 3783 (-)
Gene ID: HRGMv2_1023_56_5
Type: STP
Location: 4277 - 6361 (-)
Gene ID: HRGMv2_1023_56_6
Type: STP
Location: 6531 - 7493 (-)
Gene ID: HRGMv2_1023_56_7
Type: TC
Location: 8093 - 10279 (+)
Gene ID: HRGMv2_1023_56_8
Type: TC
Location: 10726 - 11238 (+)
Gene ID: HRGMv2_1023_56_9
Type: pfam
Location: 11245 - 12111 (+)
Gene ID: HRGMv2_1023_56_10
Type: TC
Location: 12212 - 13828 (+)
Gene ID: HRGMv2_1023_56_11
Type: CAZyme
Location: 13832 - 15214 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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