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Cluster: HRGMv2_1022_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1022_21 HRGMv2_1022_21_17 16559 17485 - CE7
TC HRGMv2_1022_21 HRGMv2_1022_21_18 17617 18444 - 3.A.1.5.27
TC HRGMv2_1022_21 HRGMv2_1022_21_19 18445 20460 - 3.A.1.5.25
TC HRGMv2_1022_21 HRGMv2_1022_21_20 20464 21420 - 3.A.1.5.38
TC HRGMv2_1022_21 HRGMv2_1022_21_21 21576 23189 - 3.A.1.5.27
pfam HRGMv2_1022_21 HRGMv2_1022_21_22 23555 25495 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1022_21 HRGMv2_1022_21_23 25502 27805 - 2.A.66.4.4
pfam HRGMv2_1022_21 HRGMv2_1022_21_24 27809 28309 - tRNA_edit
pfam HRGMv2_1022_21 HRGMv2_1022_21_25 28444 31323 - UvrA_DNA-bind | UvrA_inter
TC HRGMv2_1022_21 HRGMv2_1022_21_26 31580 32410 + 3.A.1.132.3
Gene ID: HRGMv2_1022_21_17
Type: CAZyme
Location: 16559 - 17485 (-)
Gene ID: HRGMv2_1022_21_18
Type: TC
Location: 17617 - 18444 (-)
Gene ID: HRGMv2_1022_21_19
Type: TC
Location: 18445 - 20460 (-)
Gene ID: HRGMv2_1022_21_20
Type: TC
Location: 20464 - 21420 (-)
Gene ID: HRGMv2_1022_21_21
Type: TC
Location: 21576 - 23189 (-)
Gene ID: HRGMv2_1022_21_22
Type: pfam
Location: 23555 - 25495 (-)
Gene ID: HRGMv2_1022_21_23
Type: TC
Location: 25502 - 27805 (-)
Gene ID: HRGMv2_1022_21_24
Type: pfam
Location: 27809 - 28309 (-)
Gene ID: HRGMv2_1022_21_25
Type: pfam
Location: 28444 - 31323 (-)
Gene ID: HRGMv2_1022_21_26
Type: TC
Location: 31580 - 32410 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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