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Cluster: HRGMv2_1021_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1021_29 HRGMv2_1021_29_4 5390 7840 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_1021_29 HRGMv2_1021_29_5 7862 7981 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1021_29 HRGMv2_1021_29_6 8065 8784 + GntR
TC HRGMv2_1021_29 HRGMv2_1021_29_7 9091 10407 + 3.A.1.1.45
TC HRGMv2_1021_29 HRGMv2_1021_29_8 10495 11349 + 3.A.1.1.45
TC HRGMv2_1021_29 HRGMv2_1021_29_9 11349 12188 + 3.A.1.1.45
TC HRGMv2_1021_29 HRGMv2_1021_29_10 12257 13456 + 3.A.1.1.22
CAZyme HRGMv2_1021_29 HRGMv2_1021_29_11 13913 16180 - GT35
CAZyme HRGMv2_1021_29 HRGMv2_1021_29_12 16309 17814 - GH77
Gene ID: HRGMv2_1021_29_4
Type: TC
Location: 5390 - 7840 (-)
Gene ID: HRGMv2_1021_29_5
Type:
Location: 7862 - 7981 (+)
Gene ID: HRGMv2_1021_29_6
Type: TF
Location: 8065 - 8784 (+)
Gene ID: HRGMv2_1021_29_7
Type: TC
Location: 9091 - 10407 (+)
Gene ID: HRGMv2_1021_29_8
Type: TC
Location: 10495 - 11349 (+)
Gene ID: HRGMv2_1021_29_9
Type: TC
Location: 11349 - 12188 (+)
Gene ID: HRGMv2_1021_29_10
Type: TC
Location: 12257 - 13456 (+)
Gene ID: HRGMv2_1021_29_11
Type: CAZyme
Location: 13913 - 16180 (-)
Gene ID: HRGMv2_1021_29_12
Type: CAZyme
Location: 16309 - 17814 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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