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Cluster: HRGMv2_1020_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1020_3 HRGMv2_1020_3_23 19793 21214 - GH1
TC HRGMv2_1020_3 HRGMv2_1020_3_24 21290 23068 - 4.A.3.1.1
TF HRGMv2_1020_3 HRGMv2_1020_3_25 23344 24354 + LacI
TC HRGMv2_1020_3 HRGMv2_1020_3_26 24528 26288 - 4.A.3.1.1
CAZyme HRGMv2_1020_3 HRGMv2_1020_3_27 26464 27906 - GH1
TF HRGMv2_1020_3 HRGMv2_1020_3_28 28248 29285 + LacI
CAZyme HRGMv2_1020_3 HRGMv2_1020_3_29 29553 30992 - GH1
TC HRGMv2_1020_3 HRGMv2_1020_3_30 31059 32831 - 4.A.3.1.1
TF HRGMv2_1020_3 HRGMv2_1020_3_31 33187 34191 + LacI
TC HRGMv2_1020_3 HRGMv2_1020_3_32 34406 34744 + 4.A.3.1.2
Gene ID: HRGMv2_1020_3_23
Type: CAZyme
Location: 19793 - 21214 (-)
Gene ID: HRGMv2_1020_3_24
Type: TC
Location: 21290 - 23068 (-)
Gene ID: HRGMv2_1020_3_25
Type: TF
Location: 23344 - 24354 (+)
Gene ID: HRGMv2_1020_3_26
Type: TC
Location: 24528 - 26288 (-)
Gene ID: HRGMv2_1020_3_27
Type: CAZyme
Location: 26464 - 27906 (-)
Gene ID: HRGMv2_1020_3_28
Type: TF
Location: 28248 - 29285 (+)
Gene ID: HRGMv2_1020_3_29
Type: CAZyme
Location: 29553 - 30992 (-)
Gene ID: HRGMv2_1020_3_30
Type: TC
Location: 31059 - 32831 (-)
Gene ID: HRGMv2_1020_3_31
Type: TF
Location: 33187 - 34191 (+)
Gene ID: HRGMv2_1020_3_32
Type: TC
Location: 34406 - 34744 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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