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Cluster: HRGMv2_1020_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1020_3 HRGMv2_1020_3_6 4659 5102 + 4.A.6.1.16
pfam HRGMv2_1020_3 HRGMv2_1020_3_7 5102 5383 + YajC
TC HRGMv2_1020_3 HRGMv2_1020_3_8 5420 5902 + 4.A.6.1.4
TC HRGMv2_1020_3 HRGMv2_1020_3_9 5993 6793 + 4.A.6.1.4
TC HRGMv2_1020_3 HRGMv2_1020_3_10 6783 7865 + 4.A.6.1.4
TF HRGMv2_1020_3 HRGMv2_1020_3_11 8051 8782 + GntR
STP HRGMv2_1020_3 HRGMv2_1020_3_12 8897 10063 + SIS | SIS
CAZyme HRGMv2_1020_3 HRGMv2_1020_3_13 10183 11352 + CE9
Gene ID: HRGMv2_1020_3_6
Type: TC
Location: 4659 - 5102 (+)
Gene ID: HRGMv2_1020_3_7
Type: pfam
Location: 5102 - 5383 (+)
Gene ID: HRGMv2_1020_3_8
Type: TC
Location: 5420 - 5902 (+)
Gene ID: HRGMv2_1020_3_9
Type: TC
Location: 5993 - 6793 (+)
Gene ID: HRGMv2_1020_3_10
Type: TC
Location: 6783 - 7865 (+)
Gene ID: HRGMv2_1020_3_11
Type: TF
Location: 8051 - 8782 (+)
Gene ID: HRGMv2_1020_3_12
Type: STP
Location: 8897 - 10063 (+)
Gene ID: HRGMv2_1020_3_13
Type: CAZyme
Location: 10183 - 11352 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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