Cluster: HRGMv2_1016_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1016
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1016_9 | HRGMv2_1016_9_42 | 54571 | 56898 | - | 9.A.8.1.6 |
| TC | HRGMv2_1016_9 | HRGMv2_1016_9_43 | 57022 | 57243 | - | 9.A.8.1.6 |
| STP | HRGMv2_1016_9 | HRGMv2_1016_9_44 | 57283 | 57525 | - | FeoA |
| STP | HRGMv2_1016_9 | HRGMv2_1016_9_45 | 57714 | 57962 | - | PTS-HPr |
| TC | HRGMv2_1016_9 | HRGMv2_1016_9_46 | 58164 | 59627 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | HRGMv2_1016_9 | HRGMv2_1016_9_47 | 59781 | 60236 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1016_9 | HRGMv2_1016_9_48 | 60240 | 63248 | - | GH2 |
Gene ID: HRGMv2_1016_9_42
Type: TC
Location: 54571 - 56898 (-)
Type: TC
Location: 54571 - 56898 (-)
Gene ID: HRGMv2_1016_9_43
Type: TC
Location: 57022 - 57243 (-)
Type: TC
Location: 57022 - 57243 (-)
Gene ID: HRGMv2_1016_9_44
Type: STP
Location: 57283 - 57525 (-)
Type: STP
Location: 57283 - 57525 (-)
Gene ID: HRGMv2_1016_9_45
Type: STP
Location: 57714 - 57962 (-)
Type: STP
Location: 57714 - 57962 (-)
Gene ID: HRGMv2_1016_9_46
Type: TC
Location: 58164 - 59627 (-)
Type: TC
Location: 58164 - 59627 (-)
Gene ID: HRGMv2_1016_9_47
Type:
Location: 59781 - 60236 (-)
Type:
Location: 59781 - 60236 (-)
Gene ID: HRGMv2_1016_9_48
Type: CAZyme
Location: 60240 - 63248 (-)
Type: CAZyme
Location: 60240 - 63248 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.