Cluster: HRGMv2_1016_CGC6
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1016
- CGC Family ID: CGCFAM_00003
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1016_3 | HRGMv2_1016_3_115 | 121837 | 122604 | - | 3.A.1.103.1 |
| TC | HRGMv2_1016_3 | HRGMv2_1016_3_116 | 122616 | 123461 | - | 3.A.1.103.6 |
| CAZyme | HRGMv2_1016_3 | HRGMv2_1016_3_117 | 123601 | 124554 | + | GT2 |
| pfam | HRGMv2_1016_3 | HRGMv2_1016_3_118 | 124561 | 125526 | + | Acyl_transf_3 |
| CAZyme | HRGMv2_1016_3 | HRGMv2_1016_3_119 | 125779 | 126957 | - | GT2 |
| CAZyme | HRGMv2_1016_3 | HRGMv2_1016_3_120 | 126959 | 128074 | - | GT2 |
| pfam | HRGMv2_1016_3 | HRGMv2_1016_3_121 | 128300 | 129337 | + | Acyl_transf_3 |
| pfam | HRGMv2_1016_3 | HRGMv2_1016_3_122 | 129371 | 131413 | - | DUF6541 |
| CAZyme | HRGMv2_1016_3 | HRGMv2_1016_3_123 | 131975 | 132667 | - | GT2 |
| pfam | HRGMv2_1016_3 | HRGMv2_1016_3_124 | 132963 | 133997 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_1016_3 | HRGMv2_1016_3_125 | 134007 | 135158 | - | GT4 |
| pfam | HRGMv2_1016_3 | HRGMv2_1016_3_126 | 135160 | 135741 | - | LicD |
| NULL(UNKNOWN) | HRGMv2_1016_3 | HRGMv2_1016_3_127 | 135883 | 136173 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1016_3 | HRGMv2_1016_3_128 | 136306 | 137319 | + | GT2 |
Gene ID: HRGMv2_1016_3_115
Type: TC
Location: 121837 - 122604 (-)
Type: TC
Location: 121837 - 122604 (-)
Gene ID: HRGMv2_1016_3_116
Type: TC
Location: 122616 - 123461 (-)
Type: TC
Location: 122616 - 123461 (-)
Gene ID: HRGMv2_1016_3_117
Type: CAZyme
Location: 123601 - 124554 (+)
Type: CAZyme
Location: 123601 - 124554 (+)
Gene ID: HRGMv2_1016_3_118
Type: pfam
Location: 124561 - 125526 (+)
Type: pfam
Location: 124561 - 125526 (+)
Gene ID: HRGMv2_1016_3_119
Type: CAZyme
Location: 125779 - 126957 (-)
Type: CAZyme
Location: 125779 - 126957 (-)
Gene ID: HRGMv2_1016_3_120
Type: CAZyme
Location: 126959 - 128074 (-)
Type: CAZyme
Location: 126959 - 128074 (-)
Gene ID: HRGMv2_1016_3_121
Type: pfam
Location: 128300 - 129337 (+)
Type: pfam
Location: 128300 - 129337 (+)
Gene ID: HRGMv2_1016_3_122
Type: pfam
Location: 129371 - 131413 (-)
Type: pfam
Location: 129371 - 131413 (-)
Gene ID: HRGMv2_1016_3_123
Type: CAZyme
Location: 131975 - 132667 (-)
Type: CAZyme
Location: 131975 - 132667 (-)
Gene ID: HRGMv2_1016_3_124
Type: pfam
Location: 132963 - 133997 (-)
Type: pfam
Location: 132963 - 133997 (-)
Gene ID: HRGMv2_1016_3_125
Type: CAZyme
Location: 134007 - 135158 (-)
Type: CAZyme
Location: 134007 - 135158 (-)
Gene ID: HRGMv2_1016_3_126
Type: pfam
Location: 135160 - 135741 (-)
Type: pfam
Location: 135160 - 135741 (-)
Gene ID: HRGMv2_1016_3_127
Type:
Location: 135883 - 136173 (+)
Type:
Location: 135883 - 136173 (+)
Gene ID: HRGMv2_1016_3_128
Type: CAZyme
Location: 136306 - 137319 (+)
Type: CAZyme
Location: 136306 - 137319 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.